Index _ | A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z _ __call__ (coco_pipe.dim_reduction.reducers.topology.TopologicalSignatureDistance attribute) __class_vars__ (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.io.BaseDatasetConfig attribute) (coco_pipe.io.config.BaseDatasetConfig attribute) __post_init__() (coco_pipe.io.DataContainer method) (coco_pipe.io.structures.DataContainer method) __private_attributes__ (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.io.BaseDatasetConfig attribute) (coco_pipe.io.config.BaseDatasetConfig attribute) __pydantic_complete__ (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.io.BaseDatasetConfig attribute) (coco_pipe.io.config.BaseDatasetConfig attribute) __pydantic_computed_fields__ (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.io.BaseDatasetConfig attribute) (coco_pipe.io.config.BaseDatasetConfig attribute) __pydantic_core_schema__ (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.io.BaseDatasetConfig attribute) (coco_pipe.io.config.BaseDatasetConfig attribute) __pydantic_custom_init__ (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.io.BaseDatasetConfig attribute) (coco_pipe.io.config.BaseDatasetConfig attribute) __pydantic_decorators__ (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.io.BaseDatasetConfig attribute) (coco_pipe.io.config.BaseDatasetConfig attribute) __pydantic_extra__ (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.io.BaseDatasetConfig attribute) (coco_pipe.io.config.BaseDatasetConfig attribute) __pydantic_fields__ (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.io.BaseDatasetConfig attribute) (coco_pipe.io.config.BaseDatasetConfig attribute) __pydantic_fields_set__ (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.io.BaseDatasetConfig attribute) (coco_pipe.io.config.BaseDatasetConfig attribute) __pydantic_generic_metadata__ (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.io.BaseDatasetConfig attribute) (coco_pipe.io.config.BaseDatasetConfig attribute) __pydantic_parent_namespace__ (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.io.BaseDatasetConfig attribute) (coco_pipe.io.config.BaseDatasetConfig attribute) __pydantic_post_init__ (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.io.BaseDatasetConfig attribute) (coco_pipe.io.config.BaseDatasetConfig attribute) __pydantic_private__ (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.io.BaseDatasetConfig attribute) (coco_pipe.io.config.BaseDatasetConfig attribute) __pydantic_root_model__ (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.io.BaseDatasetConfig attribute) (coco_pipe.io.config.BaseDatasetConfig attribute) __pydantic_serializer__ (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.io.BaseDatasetConfig attribute) (coco_pipe.io.config.BaseDatasetConfig attribute) __pydantic_validator__ (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.io.BaseDatasetConfig attribute) (coco_pipe.io.config.BaseDatasetConfig attribute) __repr__() (coco_pipe.io.DataContainer method) (coco_pipe.io.structures.DataContainer method) __signature__ (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.io.BaseDatasetConfig attribute) (coco_pipe.io.config.BaseDatasetConfig attribute) _ALPHA_BAND (in module coco_pipe.descriptors.extractors._parametric_fit) _ANTROPY_BATCHED_MEASURES (in module coco_pipe.descriptors.extractors.complexity) _ANTROPY_SCALAR_MEASURES (in module coco_pipe.descriptors.extractors.complexity) _apply_linear_op() (coco_pipe.io.SpatialWhitener method) (coco_pipe.io.transform.SpatialWhitener method) _attribute_dict() (coco_pipe.BaseReducer method) (coco_pipe.dim_reduction.BaseReducer method) (coco_pipe.dim_reduction.reducers.base.BaseReducer method) (coco_pipe.dim_reduction.reducers.BaseReducer method) _build_estimator() (coco_pipe.BaseReducer method) (coco_pipe.dim_reduction.BaseReducer method) (coco_pipe.dim_reduction.reducers.base.BaseReducer method) (coco_pipe.dim_reduction.reducers.BaseReducer method) _check_container() (in module coco_pipe.io.transform) _coerce_bands() (coco_pipe.descriptors.configs.BandDescriptorConfig class method) _coerce_coords() (in module coco_pipe.viz.plots) _coerce_ratio_pairs() (coco_pipe.descriptors.configs.BandDescriptorConfig class method) _coerce_series() (in module coco_pipe.viz.plots) _compute_distance_matrix() (coco_pipe.dim_reduction.reducers.topology.TopologicalSignatureDistance method) _compute_metric_safe() (coco_pipe.decoding.core.Experiment static method) (coco_pipe.decoding.Experiment static method) _create_env() (in module coco_pipe.report.engine) _create_fs_step() (coco_pipe.decoding.core.Experiment method) (coco_pipe.decoding.Experiment method) _cross_validate() (coco_pipe.decoding.core.Experiment method) (coco_pipe.decoding.Experiment method) _CUSTOM_SCALAR_MEASURES (in module coco_pipe.descriptors.extractors.complexity) _CVWithGroups (class in coco_pipe.decoding.utils) _discover_entry_points() (in module coco_pipe.decoding.registry) _discover_internal_modules() (in module coco_pipe.decoding.registry) _embed() (coco_pipe.fm.cbramod.FoundationRegressor method) (coco_pipe.fm.cbramod.pipeline.FoundationRegressor method) (coco_pipe.fm.FoundationRegressor method) _encode_image() (coco_pipe.report.core.ImageElement method) _ENV (in module coco_pipe.report.engine) _ESTIMATOR_REGISTRY (in module coco_pipe.decoding.registry) _extract_feature_importances() (coco_pipe.decoding.core.Experiment static method) (coco_pipe.decoding.Experiment static method) _extract_metadata() (coco_pipe.decoding.core.Experiment static method) (coco_pipe.decoding.Experiment static method) _filter_params() (coco_pipe.BaseReducer method) (coco_pipe.dim_reduction.BaseReducer method) (coco_pipe.dim_reduction.reducers.base.BaseReducer method) (coco_pipe.dim_reduction.reducers.BaseReducer method) _finalize_descriptor() (coco_pipe.descriptors.extractors.base.BaseDescriptorExtractor method) (coco_pipe.descriptors.extractors.BaseDescriptorExtractor method) _fit_and_score_fold() (coco_pipe.decoding.core.Experiment method) (coco_pipe.decoding.Experiment method) _fit_pca() (coco_pipe.io.SpatialWhitener method) (coco_pipe.io.transform.SpatialWhitener method) _fit_shrinkage() (coco_pipe.io.SpatialWhitener method) (coco_pipe.io.transform.SpatialWhitener method) _force_serial_execution() (coco_pipe.decoding.core.Experiment method) (coco_pipe.decoding.Experiment method) _force_standard_json() (coco_pipe.report.core.PlotlyElement method) _get_active_pairs() (coco_pipe.dim_reduction.reducers.topology.TopologicalSignatureDistance method) _get_bids_path() (in module coco_pipe.io.utils) _get_mne() (in module coco_pipe.io.utils) _get_read_raw_bids() (in module coco_pipe.io.utils) _get_reducer_summary() (in module coco_pipe.report.core) _instantiate_model() (coco_pipe.decoding.core.Experiment method) (coco_pipe.decoding.Experiment method) _LAZY_MODULES (in module coco_pipe.decoding.registry) _load_antropy() (coco_pipe.descriptors.extractors.complexity.ComplexityDescriptorExtractor method) _load_neurokit() (coco_pipe.descriptors.extractors.complexity.ComplexityDescriptorExtractor method) _merge_capabilities() (coco_pipe.BaseReducer method) (coco_pipe.dim_reduction.BaseReducer method) (coco_pipe.dim_reduction.reducers.base.BaseReducer method) (coco_pipe.dim_reduction.reducers.BaseReducer method) _metrics_summary_table() (in module coco_pipe.report.core) _NEUROKIT_SCALAR_MEASURES (in module coco_pipe.descriptors.extractors.complexity) _normalize_scalar_output() (in module coco_pipe.descriptors.extractors.complexity) _ParametricFitBatch (class in coco_pipe.descriptors.extractors._parametric_fit) _prepare_estimator() (coco_pipe.decoding.core.Experiment method) (coco_pipe.decoding.Experiment method) _rebuild_container() (in module coco_pipe.io.transform) _render_inline() (coco_pipe.report.core.PlotlyElement method) _render_row() (coco_pipe.report.core.MetricsTableElement method) (coco_pipe.report.core.TableElement method) _require_fitted() (coco_pipe.BaseReducer method) (coco_pipe.dim_reduction.BaseReducer method) (coco_pipe.dim_reduction.reducers.base.BaseReducer method) (coco_pipe.dim_reduction.reducers.BaseReducer method) _reset_cached_outputs() (coco_pipe.dim_reduction.core.DimReduction method) (coco_pipe.dim_reduction.DimReduction method) (coco_pipe.DimReduction method) _to_frame() (coco_pipe.report.core.TableElement static method) _trajectory_times() (in module coco_pipe.report.core) _validate_config() (coco_pipe.decoding.core.Experiment method) (coco_pipe.decoding.Experiment method) _validate_input() (coco_pipe.dim_reduction.core.DimReduction method) (coco_pipe.dim_reduction.DimReduction method) (coco_pipe.DimReduction method) _validate_k_range() (coco_pipe.dim_reduction.config.EvaluationConfig class method) _validate_measures() (coco_pipe.descriptors.configs.ComplexityDescriptorConfig class method) _validate_metric_dependencies() (coco_pipe.dim_reduction.config.EvaluationConfig method) _validate_metrics() (coco_pipe.dim_reduction.config.EvaluationConfig class method) _validate_model() (coco_pipe.descriptors.configs.BandDescriptorConfig method) (coco_pipe.descriptors.configs.ParametricDescriptorConfig method) _validate_n_jobs() (coco_pipe.descriptors.configs.DescriptorRuntimeConfig class method) _validate_outputs() (coco_pipe.descriptors.configs.BandDescriptorConfig class method) (coco_pipe.descriptors.configs.ParametricDescriptorConfig class method) _validate_selection_k() (coco_pipe.dim_reduction.config.EvaluationConfig class method) _validate_selection_metric() (coco_pipe.dim_reduction.config.EvaluationConfig class method) _validate_separation_method() (coco_pipe.dim_reduction.config.EvaluationConfig class method) _validate_tie_breakers() (coco_pipe.dim_reduction.config.EvaluationConfig class method) _wrap_with_tuning() (coco_pipe.decoding.core.Experiment method) (coco_pipe.decoding.Experiment method) A activation (coco_pipe.decoding.configs.MLPClassifierConfig attribute) (coco_pipe.decoding.configs.MLPRegressorConfig attribute) AdaBoostClassifierConfig (class in coco_pipe.decoding.configs) AdaBoostRegressorConfig (class in coco_pipe.decoding.configs) add_comparison() (coco_pipe.report.core.Report method) add_container() (coco_pipe.report.core.Report method) add_element() (coco_pipe.report.core.ContainerElement method) add_figure() (coco_pipe.report.core.Report method) add_finding() (coco_pipe.report.core.Section method) add_markdown() (coco_pipe.report.core.ContainerElement method) add_raw_preview() (coco_pipe.report.core.Report method) add_reduction() (coco_pipe.report.core.Report method) add_section() (coco_pipe.report.core.Report method) affinity (coco_pipe.dim_reduction.config.SpectralEmbeddingConfig attribute) aggregate() (coco_pipe.io.DataContainer method) (coco_pipe.io.structures.DataContainer method) aggregate_groups() (coco_pipe.io.DataContainer method) (coco_pipe.io.structures.DataContainer method) algorithm (coco_pipe.decoding.configs.AdaBoostClassifierConfig attribute) (coco_pipe.decoding.configs.KNeighborsClassifierConfig attribute) (coco_pipe.decoding.configs.KNeighborsRegressorConfig attribute) (coco_pipe.dim_reduction.config.DaskTruncatedSVDConfig attribute) (coco_pipe.dim_reduction.reducers.linear.DaskTruncatedSVDReducer attribute), [1] allow_2d (coco_pipe.decoding.configs.GeneralizingEstimatorConfig attribute) (coco_pipe.decoding.configs.SlidingEstimatorConfig attribute) alpha (coco_pipe.decoding.configs.ElasticNetConfig attribute) (coco_pipe.decoding.configs.GradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.LassoConfig attribute) (coco_pipe.decoding.configs.MLPClassifierConfig attribute) (coco_pipe.decoding.configs.MLPRegressorConfig attribute) (coco_pipe.decoding.configs.RidgeConfig attribute) (coco_pipe.decoding.configs.SGDMixin attribute) alpha_1 (coco_pipe.decoding.configs.ARDRegressionConfig attribute) (coco_pipe.decoding.configs.BayesianRidgeConfig attribute) alpha_2 (coco_pipe.decoding.configs.ARDRegressionConfig attribute) (coco_pipe.decoding.configs.BayesianRidgeConfig attribute) alpha_init (coco_pipe.decoding.configs.BayesianRidgeConfig attribute) aperiodic_mode (coco_pipe.descriptors.configs.ParametricDescriptorConfig attribute) ARDRegressionConfig (class in coco_pipe.decoding.configs) ArrayLike (in module coco_pipe.dim_reduction.reducers.base) AtomicEstimator (in module coco_pipe.decoding.configs) author (coco_pipe.report.config.ReportConfig attribute) average (coco_pipe.decoding.configs.SGDMixin attribute) B backbone_name (coco_pipe.decoding.configs.LPFTConfig attribute) backend (coco_pipe.descriptors.configs.ComplexityDescriptorConfig attribute) (coco_pipe.descriptors.configs.ParametricDescriptorConfig attribute) balance() (coco_pipe.io.DataContainer method) (coco_pipe.io.structures.DataContainer method) BandDescriptorConfig (class in coco_pipe.descriptors.configs) BandDescriptorExtractor (class in coco_pipe.descriptors.extractors.spectral) bands (coco_pipe.descriptors.configs.BandDescriptorConfig attribute) (coco_pipe.descriptors.configs.DescriptorFamiliesConfig attribute), [1] base_estimator (coco_pipe.decoding.configs.GeneralizingEstimatorConfig attribute) (coco_pipe.decoding.configs.SlidingEstimatorConfig attribute) base_regressor (coco_pipe.fm.cbramod.FoundationRegressor attribute) (coco_pipe.fm.cbramod.pipeline.FoundationRegressor attribute) (coco_pipe.fm.FoundationRegressor attribute) BaseDataset (class in coco_pipe.io.dataset) BaseDatasetConfig (class in coco_pipe.io) (class in coco_pipe.io.config) BaseDescriptorExtractor (class in coco_pipe.descriptors.extractors) (class in coco_pipe.descriptors.extractors.base) BaseEstimatorConfig (class in coco_pipe.decoding.configs) baseline (coco_pipe.io.dataset.BIDSDataset attribute) baseline_correction() (coco_pipe.io.DataContainer method) (coco_pipe.io.structures.DataContainer method) BasePSDDescriptorExtractor (class in coco_pipe.descriptors.extractors) (class in coco_pipe.descriptors.extractors.base) BaseReducer (class in coco_pipe) (class in coco_pipe.dim_reduction) (class in coco_pipe.dim_reduction.reducers) (class in coco_pipe.dim_reduction.reducers.base) BaseReducerConfig (class in coco_pipe.dim_reduction.config) batch_size (coco_pipe.decoding.configs.LPFTConfig attribute) (coco_pipe.decoding.configs.MLPClassifierConfig attribute) (coco_pipe.decoding.configs.MLPRegressorConfig attribute) (coco_pipe.decoding.configs.SkorchClassifierConfig attribute) (coco_pipe.dim_reduction.config.IncrementalPCAConfig attribute) (coco_pipe.dim_reduction.config.ParametricUMAPConfig attribute) (coco_pipe.dim_reduction.config.TopologicalAEConfig attribute) (coco_pipe.dim_reduction.IncrementalPCAReducer attribute), [1] (coco_pipe.dim_reduction.reducers.IncrementalPCAReducer attribute), [1] (coco_pipe.dim_reduction.reducers.linear.IncrementalPCAReducer attribute), [1] (coco_pipe.dim_reduction.reducers.neighbor.ParametricUMAPReducer attribute) (coco_pipe.dim_reduction.reducers.topology.TopologicalAEReducer attribute) (coco_pipe.IncrementalPCAReducer attribute), [1] BayesianRidgeConfig (class in coco_pipe.decoding.configs) best_vals (coco_pipe.report.core.MetricsTableElement attribute) beta_1 (coco_pipe.decoding.configs.MLPClassifierConfig attribute) (coco_pipe.decoding.configs.MLPRegressorConfig attribute) beta_2 (coco_pipe.decoding.configs.MLPClassifierConfig attribute) (coco_pipe.decoding.configs.MLPRegressorConfig attribute) BIDSConfig (class in coco_pipe.io) (class in coco_pipe.io.config) BIDSDataset (class in coco_pipe.io.dataset) BIDSPath (in module coco_pipe.io.utils) bootstrap (coco_pipe.decoding.configs.ExtraTreesRegressorConfig attribute) (coco_pipe.decoding.configs.RandomForestClassifierConfig attribute) (coco_pipe.decoding.configs.RandomForestRegressorConfig attribute) break_ties (coco_pipe.decoding.configs.SVCConfig attribute) C C (coco_pipe.decoding.configs.LogisticRegressionConfig attribute) (coco_pipe.decoding.configs.SupportVectorMixin attribute) cache_size (coco_pipe.decoding.configs.SupportVectorMixin attribute) capabilities (coco_pipe.BaseReducer property) (coco_pipe.descriptors.extractors.base.BaseDescriptorExtractor property) (coco_pipe.descriptors.extractors.BaseDescriptorExtractor property) (coco_pipe.descriptors.extractors.complexity.ComplexityDescriptorExtractor property) (coco_pipe.descriptors.extractors.parametric.ParametricDescriptorExtractor property) (coco_pipe.descriptors.extractors.spectral.BandDescriptorExtractor property) (coco_pipe.dim_reduction.BaseReducer property) (coco_pipe.dim_reduction.core.DimReduction property) (coco_pipe.dim_reduction.DimReduction property) (coco_pipe.dim_reduction.IncrementalPCAReducer property) (coco_pipe.dim_reduction.IsomapReducer property) (coco_pipe.dim_reduction.LLEReducer property) (coco_pipe.dim_reduction.MDSReducer property) (coco_pipe.dim_reduction.PCAReducer property) (coco_pipe.dim_reduction.reducers.base.BaseReducer property) (coco_pipe.dim_reduction.reducers.BaseReducer property) (coco_pipe.dim_reduction.reducers.IncrementalPCAReducer property) (coco_pipe.dim_reduction.reducers.IsomapReducer property) (coco_pipe.dim_reduction.reducers.linear.DaskPCAReducer property) (coco_pipe.dim_reduction.reducers.linear.DaskTruncatedSVDReducer property) (coco_pipe.dim_reduction.reducers.linear.IncrementalPCAReducer property) (coco_pipe.dim_reduction.reducers.linear.PCAReducer property) (coco_pipe.dim_reduction.reducers.LLEReducer property) (coco_pipe.dim_reduction.reducers.manifold.IsomapReducer property) (coco_pipe.dim_reduction.reducers.manifold.LLEReducer property) (coco_pipe.dim_reduction.reducers.manifold.MDSReducer property) (coco_pipe.dim_reduction.reducers.manifold.SpectralEmbeddingReducer property) (coco_pipe.dim_reduction.reducers.MDSReducer property) (coco_pipe.dim_reduction.reducers.neighbor.PacmapReducer property) (coco_pipe.dim_reduction.reducers.neighbor.ParametricUMAPReducer property) (coco_pipe.dim_reduction.reducers.neighbor.PHATEReducer property) (coco_pipe.dim_reduction.reducers.neighbor.TrimapReducer property) (coco_pipe.dim_reduction.reducers.neighbor.TSNEReducer property) (coco_pipe.dim_reduction.reducers.neighbor.UMAPReducer property) (coco_pipe.dim_reduction.reducers.neural.IVISReducer property) (coco_pipe.dim_reduction.reducers.PCAReducer property) (coco_pipe.dim_reduction.reducers.spatiotemporal.DMDReducer property) (coco_pipe.dim_reduction.reducers.spatiotemporal.TRCAReducer property) (coco_pipe.dim_reduction.reducers.SpectralEmbeddingReducer property) (coco_pipe.dim_reduction.reducers.topology.TopologicalAEReducer property) (coco_pipe.dim_reduction.reducers.TSNEReducer property) (coco_pipe.dim_reduction.SpectralEmbeddingReducer property) (coco_pipe.dim_reduction.TSNEReducer property) (coco_pipe.DimReduction property) (coco_pipe.IncrementalPCAReducer property) (coco_pipe.IsomapReducer property) (coco_pipe.LLEReducer property) (coco_pipe.MDSReducer property) (coco_pipe.PCAReducer property) (coco_pipe.SpectralEmbeddingReducer property) (coco_pipe.TSNEReducer property) caption (coco_pipe.report.core.ImageElement attribute) categorical_features (coco_pipe.decoding.configs.HistGradientBoostingRegressorConfig attribute) CBRAModRegressionPipeline (class in coco_pipe.fm) (class in coco_pipe.fm.cbramod) (class in coco_pipe.fm.cbramod.pipeline) ccp_alpha (coco_pipe.decoding.configs.DecisionTreeRegressorConfig attribute) (coco_pipe.decoding.configs.GradientBoostingClassifierConfig attribute) (coco_pipe.decoding.configs.GradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.TreeMixin attribute) center() (coco_pipe.io.DataContainer method) (coco_pipe.io.structures.DataContainer method) check_constant_columns() (in module coco_pipe.report.quality) check_flatline() (in module coco_pipe.report.quality) check_missingness() (in module coco_pipe.report.quality) check_name (coco_pipe.report.quality.CheckResult attribute), [1] check_outliers_zscore() (in module coco_pipe.report.quality) CheckResult (class in coco_pipe.report.quality) children (coco_pipe.report.core.ContainerElement attribute) class_weight (coco_pipe.decoding.configs.LogisticRegressionConfig attribute) (coco_pipe.decoding.configs.RandomForestClassifierConfig attribute) (coco_pipe.decoding.configs.SGDClassifierConfig attribute) (coco_pipe.decoding.configs.SVCConfig attribute) clean (coco_pipe.io.config.TabularConfig attribute) (coco_pipe.io.TabularConfig attribute) clean() (coco_pipe.io.dataset.TabularDataset static method) clean_kwargs (coco_pipe.io.config.TabularConfig attribute) (coco_pipe.io.dataset.TabularDataset attribute) (coco_pipe.io.TabularConfig attribute) coco_pipe module coco_pipe.decoding module coco_pipe.decoding.configs module coco_pipe.decoding.core module coco_pipe.decoding.registry module coco_pipe.decoding.utils module coco_pipe.descriptors module coco_pipe.descriptors.configs module coco_pipe.descriptors.core module coco_pipe.descriptors.extractors module coco_pipe.descriptors.extractors._parametric_fit module coco_pipe.descriptors.extractors._psd module coco_pipe.descriptors.extractors.base module coco_pipe.descriptors.extractors.complexity module coco_pipe.descriptors.extractors.parametric module coco_pipe.descriptors.extractors.spectral module coco_pipe.descriptors.validation module coco_pipe.dim_reduction module coco_pipe.dim_reduction.analysis module coco_pipe.dim_reduction.config module coco_pipe.dim_reduction.core module coco_pipe.dim_reduction.evaluation module coco_pipe.dim_reduction.evaluation.core module coco_pipe.dim_reduction.evaluation.geometry module coco_pipe.dim_reduction.evaluation.metrics module coco_pipe.dim_reduction.evaluation.velocity module coco_pipe.dim_reduction.reducers module coco_pipe.dim_reduction.reducers.base module coco_pipe.dim_reduction.reducers.linear module coco_pipe.dim_reduction.reducers.manifold module coco_pipe.dim_reduction.reducers.neighbor module coco_pipe.dim_reduction.reducers.neural module coco_pipe.dim_reduction.reducers.spatiotemporal module coco_pipe.dim_reduction.reducers.topology module coco_pipe.fm module coco_pipe.fm.cbramod module coco_pipe.fm.cbramod.pipeline module coco_pipe.io module coco_pipe.io.config module coco_pipe.io.dataset module coco_pipe.io.load module coco_pipe.io.structures module coco_pipe.io.transform module coco_pipe.io.utils module coco_pipe.report module coco_pipe.report.api module coco_pipe.report.config module coco_pipe.report.core module coco_pipe.report.engine module coco_pipe.report.provenance module coco_pipe.report.quality module coco_pipe.utils module coco_pipe.viz module coco_pipe.viz.dim_reduction module coco_pipe.viz.plotly_utils module coco_pipe.viz.plots module coco_pipe.viz.utils module code (coco_pipe.report.core.Section attribute) coef0 (coco_pipe.decoding.configs.SupportVectorMixin attribute) col_sep (coco_pipe.io.config.TabularConfig attribute) (coco_pipe.io.dataset.TabularDataset attribute) (coco_pipe.io.TabularConfig attribute) collect() (coco_pipe.dim_reduction.evaluation.core.MethodSelector method) (coco_pipe.dim_reduction.evaluation.MethodSelector method) collect_payload() (coco_pipe.report.core.ContainerElement method) (coco_pipe.report.core.Element method) (coco_pipe.report.core.InteractiveTableElement method) (coco_pipe.report.core.PlotlyElement method) columns_to_dims (coco_pipe.io.config.TabularConfig attribute) (coco_pipe.io.dataset.TabularDataset attribute) (coco_pipe.io.TabularConfig attribute) command (coco_pipe.report.config.ProvenanceConfig attribute) complexity (coco_pipe.descriptors.configs.DescriptorFamiliesConfig attribute), [1] ComplexityDescriptorConfig (class in coco_pipe.descriptors.configs) ComplexityDescriptorExtractor (class in coco_pipe.descriptors.extractors.complexity) components_ (coco_pipe.dim_reduction.PCAReducer property) (coco_pipe.dim_reduction.reducers.linear.PCAReducer property) (coco_pipe.dim_reduction.reducers.PCAReducer property) (coco_pipe.PCAReducer property) compute_coranking_matrix() (in module coco_pipe.dim_reduction.evaluation) (in module coco_pipe.dim_reduction.evaluation.metrics) compute_mrre() (in module coco_pipe.dim_reduction.evaluation) (in module coco_pipe.dim_reduction.evaluation.metrics) compute_psd() (in module coco_pipe.descriptors.extractors._psd) compute_score (coco_pipe.decoding.configs.ARDRegressionConfig attribute) (coco_pipe.decoding.configs.BayesianRidgeConfig attribute) compute_velocity_fields() (in module coco_pipe.dim_reduction.evaluation) (in module coco_pipe.dim_reduction.evaluation.velocity) config (coco_pipe.decoding.core.Experiment attribute) (coco_pipe.decoding.Experiment attribute) (coco_pipe.DescriptorPipeline attribute), [1] 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(coco_pipe.decoding.configs.RandomForestClassifierConfig attribute) (coco_pipe.decoding.configs.RandomForestRegressorConfig attribute) cross_validate_score() (in module coco_pipe.decoding) (in module coco_pipe.decoding.utils) cv (coco_pipe.decoding.configs.ExperimentConfig attribute) (coco_pipe.decoding.configs.FeatureSelectionConfig attribute) (coco_pipe.decoding.ExperimentConfig attribute) (coco_pipe.decoding.utils._CVWithGroups attribute) CVConfig (class in coco_pipe.decoding.configs) D DaskPCAConfig (class in coco_pipe.dim_reduction.config) DaskPCAReducer (class in coco_pipe.dim_reduction.reducers.linear) DaskTruncatedSVDConfig (class in coco_pipe.dim_reduction.config) DaskTruncatedSVDReducer (class in coco_pipe.dim_reduction.reducers.linear) data (coco_pipe.report.core.InteractiveTableElement attribute) (coco_pipe.report.core.TableElement attribute) DataContainer (class in coco_pipe.io) (class in coco_pipe.io.structures) dataset (coco_pipe.io.config.DatasetConfig attribute) 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DescriptorPipeline (class in coco_pipe) (class in coco_pipe.descriptors) (class in coco_pipe.descriptors.core) DescriptorRuntimeConfig (class in coco_pipe.descriptors.configs) detect_runs() (in module coco_pipe.io.utils) detect_sessions() (in module coco_pipe.io.utils) detect_subjects() (in module coco_pipe.io.utils) device (coco_pipe.decoding.configs.LPFTConfig attribute) (coco_pipe.decoding.configs.SkorchClassifierConfig attribute) (coco_pipe.dim_reduction.config.TopologicalAEConfig attribute) (coco_pipe.dim_reduction.reducers.topology.TopologicalAEReducer attribute) diagnostics_ (coco_pipe.dim_reduction.core.DimReduction attribute), [1] (coco_pipe.dim_reduction.DimReduction attribute), [1] (coco_pipe.DimReduction attribute), [1] DimReduction (class in coco_pipe) (class in coco_pipe.dim_reduction) (class in coco_pipe.dim_reduction.core) dims (coco_pipe.io.config.EmbeddingConfig attribute) (coco_pipe.io.DataContainer attribute), [1] (coco_pipe.io.dataset.EmbeddingDataset attribute) 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(coco_pipe.decoding.configs.FeatureSelectionConfig attribute) (coco_pipe.decoding.configs.TemporalConfig attribute) (coco_pipe.decoding.configs.TuningConfig attribute) (coco_pipe.descriptors.configs.BandDescriptorConfig attribute) (coco_pipe.descriptors.configs.ComplexityDescriptorConfig attribute) (coco_pipe.descriptors.configs.ParametricDescriptorConfig attribute) epochs (coco_pipe.dim_reduction.config.TopologicalAEConfig attribute) (coco_pipe.dim_reduction.reducers.topology.TopologicalAEReducer attribute) epsilon (coco_pipe.decoding.configs.MLPClassifierConfig attribute) (coco_pipe.decoding.configs.MLPRegressorConfig attribute) (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.decoding.configs.SVRConfig attribute) errors (coco_pipe.descriptors.extractors._parametric_fit._ParametricFitBatch attribute), [1] estimator_ (coco_pipe.io.SklearnWrapper attribute), [1] (coco_pipe.io.transform.SklearnWrapper attribute), [1] EstimatorConfigType (in module coco_pipe.decoding.configs) 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families (coco_pipe.DescriptorConfig attribute), [1] (coco_pipe.descriptors.configs.DescriptorConfig attribute), [1] (coco_pipe.descriptors.DescriptorConfig attribute), [1] family_name (coco_pipe.descriptors.extractors.base.BaseDescriptorExtractor attribute), [1] (coco_pipe.descriptors.extractors.BaseDescriptorExtractor attribute), [1] (coco_pipe.descriptors.extractors.complexity.ComplexityDescriptorExtractor attribute), [1] (coco_pipe.descriptors.extractors.parametric.ParametricDescriptorExtractor attribute), [1] (coco_pipe.descriptors.extractors.spectral.BandDescriptorExtractor attribute), [1] family_order (coco_pipe.DescriptorPipeline attribute), [1] (coco_pipe.descriptors.core.DescriptorPipeline attribute), [1] (coco_pipe.descriptors.DescriptorPipeline attribute), [1] feature_selection (coco_pipe.decoding.configs.ExperimentConfig attribute) (coco_pipe.decoding.ExperimentConfig attribute) FeatureSelectionConfig (class in coco_pipe.decoding.configs) figure (coco_pipe.report.core.PlotlyElement attribute) filter_metric_frame() (in module coco_pipe.viz.utils) filter_metrics() (in module coco_pipe.viz.utils) filterbank (coco_pipe.dim_reduction.config.TRCAConfig attribute) (coco_pipe.dim_reduction.reducers.spatiotemporal.TRCAReducer attribute) findings (coco_pipe.report.core.Section attribute) fit() (coco_pipe.BaseReducer method) (coco_pipe.dim_reduction.BaseReducer method) (coco_pipe.dim_reduction.core.DimReduction method) (coco_pipe.dim_reduction.DimReduction method) (coco_pipe.dim_reduction.IncrementalPCAReducer method) (coco_pipe.dim_reduction.IsomapReducer method) (coco_pipe.dim_reduction.LLEReducer method) (coco_pipe.dim_reduction.MDSReducer method) (coco_pipe.dim_reduction.PCAReducer method) (coco_pipe.dim_reduction.reducers.base.BaseReducer method) (coco_pipe.dim_reduction.reducers.BaseReducer method) (coco_pipe.dim_reduction.reducers.IncrementalPCAReducer method) (coco_pipe.dim_reduction.reducers.IsomapReducer method) (coco_pipe.dim_reduction.reducers.linear.DaskPCAReducer method) (coco_pipe.dim_reduction.reducers.linear.DaskTruncatedSVDReducer method) (coco_pipe.dim_reduction.reducers.linear.IncrementalPCAReducer method) (coco_pipe.dim_reduction.reducers.linear.PCAReducer method) (coco_pipe.dim_reduction.reducers.LLEReducer method) (coco_pipe.dim_reduction.reducers.manifold.IsomapReducer method) (coco_pipe.dim_reduction.reducers.manifold.LLEReducer method) (coco_pipe.dim_reduction.reducers.manifold.MDSReducer method) (coco_pipe.dim_reduction.reducers.manifold.SpectralEmbeddingReducer method) (coco_pipe.dim_reduction.reducers.MDSReducer method) (coco_pipe.dim_reduction.reducers.neighbor.PacmapReducer method) (coco_pipe.dim_reduction.reducers.neighbor.ParametricUMAPReducer method) (coco_pipe.dim_reduction.reducers.neighbor.PHATEReducer method) (coco_pipe.dim_reduction.reducers.neighbor.TrimapReducer method) (coco_pipe.dim_reduction.reducers.neighbor.TSNEReducer method) (coco_pipe.dim_reduction.reducers.neighbor.UMAPReducer method) (coco_pipe.dim_reduction.reducers.neural.IVISReducer method) (coco_pipe.dim_reduction.reducers.PCAReducer method) (coco_pipe.dim_reduction.reducers.spatiotemporal.DMDReducer method) (coco_pipe.dim_reduction.reducers.spatiotemporal.TRCAReducer method) (coco_pipe.dim_reduction.reducers.SpectralEmbeddingReducer method) (coco_pipe.dim_reduction.reducers.topology.TopologicalAEReducer method) (coco_pipe.dim_reduction.reducers.TSNEReducer method) (coco_pipe.dim_reduction.SpectralEmbeddingReducer method) (coco_pipe.dim_reduction.TSNEReducer method) (coco_pipe.DimReduction method) (coco_pipe.fm.cbramod.FoundationRegressor method) (coco_pipe.fm.cbramod.pipeline.FoundationRegressor method) (coco_pipe.fm.FoundationRegressor method) (coco_pipe.IncrementalPCAReducer method) (coco_pipe.io.SklearnWrapper method) (coco_pipe.io.SpatialWhitener method) (coco_pipe.io.transform.SklearnWrapper method) (coco_pipe.io.transform.SpatialWhitener method) (coco_pipe.IsomapReducer method) (coco_pipe.LLEReducer method) (coco_pipe.MDSReducer method) (coco_pipe.PCAReducer method) (coco_pipe.SpectralEmbeddingReducer method) (coco_pipe.TSNEReducer method) fit_config (coco_pipe.descriptors.extractors.spectral.BandDescriptorExtractor attribute) fit_intercept (coco_pipe.decoding.configs.ARDRegressionConfig attribute) (coco_pipe.decoding.configs.BayesianRidgeConfig attribute) (coco_pipe.decoding.configs.ElasticNetConfig attribute) (coco_pipe.decoding.configs.LassoConfig attribute) (coco_pipe.decoding.configs.LinearMixin attribute) (coco_pipe.decoding.configs.LogisticRegressionConfig attribute) (coco_pipe.decoding.configs.RidgeConfig attribute) (coco_pipe.decoding.configs.SGDMixin attribute) fit_parametric_batch() (in module coco_pipe.descriptors.extractors._parametric_fit) fit_single_spectrum() (in module coco_pipe.descriptors.extractors._parametric_fit) fit_transform() (coco_pipe.BaseReducer method) (coco_pipe.dim_reduction.BaseReducer method) (coco_pipe.dim_reduction.core.DimReduction method) (coco_pipe.dim_reduction.DimReduction method) (coco_pipe.dim_reduction.MDSReducer method) (coco_pipe.dim_reduction.reducers.base.BaseReducer method) (coco_pipe.dim_reduction.reducers.BaseReducer method) (coco_pipe.dim_reduction.reducers.manifold.MDSReducer method) (coco_pipe.dim_reduction.reducers.manifold.SpectralEmbeddingReducer method) (coco_pipe.dim_reduction.reducers.MDSReducer method) (coco_pipe.dim_reduction.reducers.neighbor.PacmapReducer method) (coco_pipe.dim_reduction.reducers.neighbor.TrimapReducer method) (coco_pipe.dim_reduction.reducers.neighbor.TSNEReducer method) (coco_pipe.dim_reduction.reducers.SpectralEmbeddingReducer method) (coco_pipe.dim_reduction.reducers.TSNEReducer method) (coco_pipe.dim_reduction.SpectralEmbeddingReducer method) (coco_pipe.dim_reduction.TSNEReducer method) (coco_pipe.DimReduction method) (coco_pipe.io.SklearnWrapper method) (coco_pipe.io.SpatialWhitener method) (coco_pipe.io.transform.SklearnWrapper method) (coco_pipe.io.transform.SpatialWhitener method) (coco_pipe.MDSReducer method) (coco_pipe.SpectralEmbeddingReducer method) (coco_pipe.TSNEReducer method) flatten() (coco_pipe.io.DataContainer method) (coco_pipe.io.structures.DataContainer method) fmax (coco_pipe.descriptors.configs.BandDescriptorConfig attribute) fmin (coco_pipe.descriptors.configs.BandDescriptorConfig attribute) force_transpose (coco_pipe.dim_reduction.config.DMDConfig attribute) (coco_pipe.dim_reduction.reducers.spatiotemporal.DMDReducer attribute) forward() (coco_pipe.dim_reduction.reducers.topology.TopologicalSignatureDistance method) FoundationRegressor (class in coco_pipe.fm) (class in coco_pipe.fm.cbramod) (class in coco_pipe.fm.cbramod.pipeline) FP_ratio (coco_pipe.dim_reduction.config.PacmapConfig attribute) (coco_pipe.dim_reduction.reducers.neighbor.PacmapReducer attribute) freq_range (coco_pipe.descriptors.configs.ParametricDescriptorConfig attribute) freqs (coco_pipe.descriptors.extractors._parametric_fit._ParametricFitBatch attribute), [1] from_bids() (in module coco_pipe.report.api) from_container() (in module coco_pipe.report.api) from_embeddings() (in module coco_pipe.report.api) from_frame() (coco_pipe.dim_reduction.evaluation.core.MethodSelector class method) (coco_pipe.dim_reduction.evaluation.MethodSelector class method) from_records() (coco_pipe.dim_reduction.evaluation.core.MethodSelector class method) (coco_pipe.dim_reduction.evaluation.MethodSelector class method) from_reductions() (in module coco_pipe.report.api) from_tabular() (in module coco_pipe.report.api) ft_epochs (coco_pipe.decoding.configs.LPFTConfig attribute) ft_lr (coco_pipe.decoding.configs.LPFTConfig attribute) G gamma (coco_pipe.decoding.configs.SupportVectorMixin attribute) (coco_pipe.dim_reduction.config.SpectralEmbeddingConfig attribute) GaussianNBConfig (class in coco_pipe.decoding.configs) GeneralizingEstimatorConfig (class in coco_pipe.decoding.configs) get_best_params() (coco_pipe.decoding.core.ExperimentResult method) get_components() (coco_pipe.BaseReducer method) (coco_pipe.dim_reduction.BaseReducer method) (coco_pipe.dim_reduction.core.DimReduction method) (coco_pipe.dim_reduction.DimReduction method) (coco_pipe.dim_reduction.IncrementalPCAReducer method) (coco_pipe.dim_reduction.PCAReducer method) (coco_pipe.dim_reduction.reducers.base.BaseReducer method) (coco_pipe.dim_reduction.reducers.BaseReducer method) (coco_pipe.dim_reduction.reducers.IncrementalPCAReducer method) (coco_pipe.dim_reduction.reducers.linear.DaskPCAReducer method) (coco_pipe.dim_reduction.reducers.linear.DaskTruncatedSVDReducer method) (coco_pipe.dim_reduction.reducers.linear.IncrementalPCAReducer method) (coco_pipe.dim_reduction.reducers.linear.PCAReducer method) (coco_pipe.dim_reduction.reducers.PCAReducer method) (coco_pipe.dim_reduction.reducers.spatiotemporal.DMDReducer method) (coco_pipe.dim_reduction.reducers.spatiotemporal.TRCAReducer method) (coco_pipe.DimReduction method) (coco_pipe.IncrementalPCAReducer method) (coco_pipe.PCAReducer method) get_cv_splitter() (in module coco_pipe.decoding.utils) get_detailed_scores() (coco_pipe.decoding.core.ExperimentResult method) get_diagnostics() (coco_pipe.BaseReducer method) (coco_pipe.dim_reduction.BaseReducer method) (coco_pipe.dim_reduction.core.DimReduction method) (coco_pipe.dim_reduction.DimReduction method) (coco_pipe.dim_reduction.reducers.base.BaseReducer method) (coco_pipe.dim_reduction.reducers.BaseReducer method) (coco_pipe.DimReduction method) get_env() (in module coco_pipe.report.engine) get_environment_info() (in module coco_pipe.report.provenance) get_estimator_cls() (in module coco_pipe.decoding) (in module coco_pipe.decoding.registry) get_feature_stability() (coco_pipe.decoding.core.ExperimentResult method) get_generalization_matrix() (coco_pipe.decoding.core.ExperimentResult method) get_git_revision_hash() (in module coco_pipe.report.provenance) get_metrics() (coco_pipe.dim_reduction.core.DimReduction method) (coco_pipe.dim_reduction.DimReduction method) (coco_pipe.DimReduction method) get_n_splits() (coco_pipe.decoding.utils._CVWithGroups method) (coco_pipe.decoding.utils.SimpleSplit method) get_package_version() (in module coco_pipe.report.provenance) get_predictions() (coco_pipe.decoding.core.ExperimentResult method) get_pytorch_module() (coco_pipe.dim_reduction.reducers.topology.TopologicalAEReducer method) get_quality_metadata() (coco_pipe.BaseReducer method) (coco_pipe.dim_reduction.BaseReducer method) (coco_pipe.dim_reduction.core.DimReduction method) (coco_pipe.dim_reduction.DimReduction method) (coco_pipe.dim_reduction.reducers.base.BaseReducer method) (coco_pipe.dim_reduction.reducers.BaseReducer method) (coco_pipe.DimReduction method) get_reducer_class() (in module coco_pipe.dim_reduction.config) get_scorer() (in module coco_pipe.decoding.utils) get_summary() (coco_pipe.dim_reduction.core.DimReduction method) (coco_pipe.dim_reduction.DimReduction method) (coco_pipe.DimReduction method) git_hash (coco_pipe.report.config.ProvenanceConfig attribute) gradient_importance() (in module coco_pipe.dim_reduction.analysis) GradientBoostingClassifierConfig (class in coco_pipe.decoding.configs) GradientBoostingRegressorConfig (class in coco_pipe.decoding.configs) grids (coco_pipe.decoding.configs.ExperimentConfig attribute) (coco_pipe.decoding.ExperimentConfig attribute) groups (coco_pipe.decoding.utils._CVWithGroups attribute) H header (coco_pipe.io.config.TabularConfig attribute) (coco_pipe.io.dataset.TabularDataset attribute) (coco_pipe.io.TabularConfig attribute) height (coco_pipe.report.core.PlotlyElement attribute) hidden_dims (coco_pipe.dim_reduction.config.TopologicalAEConfig attribute) (coco_pipe.dim_reduction.reducers.topology.TopologicalAEReducer attribute) hidden_layer_sizes (coco_pipe.decoding.configs.MLPClassifierConfig attribute) (coco_pipe.decoding.configs.MLPRegressorConfig attribute) higher_is_better (coco_pipe.report.core.MetricsTableElement attribute) highlight_cols (coco_pipe.report.core.MetricsTableElement attribute) HistGradientBoostingRegressorConfig (class in coco_pipe.decoding.configs) html (coco_pipe.report.core.HtmlElement attribute) HtmlElement (class in coco_pipe.report.core) I icon (coco_pipe.report.core.Section attribute) id (coco_pipe.report.core.Section attribute) id_fn (coco_pipe.io.dataset.EmbeddingDataset attribute) ids (coco_pipe.io.DataContainer attribute), [1] (coco_pipe.io.structures.DataContainer attribute), [1] ImageElement (class in coco_pipe.report.core) import_optional_dependency() (in module coco_pipe.utils) IncrementalPCAConfig (class in coco_pipe.dim_reduction.config) IncrementalPCAReducer (class in coco_pipe) (class in coco_pipe.dim_reduction) (class in coco_pipe.dim_reduction.reducers) (class in coco_pipe.dim_reduction.reducers.linear) index_col (coco_pipe.io.config.TabularConfig attribute) (coco_pipe.io.dataset.TabularDataset attribute) (coco_pipe.io.TabularConfig attribute) infer_metric_plot_type() (in module coco_pipe.viz.utils) init (coco_pipe.decoding.configs.GradientBoostingClassifierConfig attribute) (coco_pipe.decoding.configs.GradientBoostingRegressorConfig attribute) (coco_pipe.dim_reduction.config.PacmapConfig attribute) (coco_pipe.dim_reduction.config.TSNEConfig attribute) (coco_pipe.dim_reduction.reducers.neighbor.PacmapReducer attribute) input (coco_pipe.DescriptorConfig attribute), [1] (coco_pipe.descriptors.configs.DescriptorConfig attribute), [1] (coco_pipe.descriptors.DescriptorConfig attribute), [1] input_dim_ (coco_pipe.dim_reduction.reducers.topology.TopologicalAEReducer attribute) interaction_cst (coco_pipe.decoding.configs.HistGradientBoostingRegressorConfig attribute) InteractiveTableElement (class in coco_pipe.report.core) intercept_scaling (coco_pipe.decoding.configs.LogisticRegressionConfig attribute) interpret() (coco_pipe.dim_reduction.core.DimReduction method) (coco_pipe.dim_reduction.DimReduction method) (coco_pipe.DimReduction method) interpret_features() (in module coco_pipe) (in module coco_pipe.dim_reduction) (in module coco_pipe.dim_reduction.analysis) interpretation_ (coco_pipe.dim_reduction.core.DimReduction attribute), [1] (coco_pipe.dim_reduction.DimReduction attribute), [1] (coco_pipe.DimReduction attribute), [1] interpretation_records_ (coco_pipe.dim_reduction.core.DimReduction attribute), [1] (coco_pipe.dim_reduction.DimReduction attribute), [1] (coco_pipe.DimReduction attribute), [1] inverse_transform() (coco_pipe.io.SklearnWrapper method) (coco_pipe.io.SpatialWhitener method) (coco_pipe.io.transform.SklearnWrapper method) (coco_pipe.io.transform.SpatialWhitener method) inverse_whitener_ (coco_pipe.io.SpatialWhitener attribute), [1] (coco_pipe.io.transform.SpatialWhitener attribute), [1] is_categorical() (in module coco_pipe.viz.utils) is_issue (coco_pipe.report.quality.CheckResult property) isel() (coco_pipe.io.DataContainer method) (coco_pipe.io.structures.DataContainer method) IsomapConfig (class in coco_pipe.dim_reduction.config) IsomapReducer (class in coco_pipe) (class in coco_pipe.dim_reduction) (class in coco_pipe.dim_reduction.reducers) (class in coco_pipe.dim_reduction.reducers.manifold) IVISConfig (class in coco_pipe.dim_reduction.config) IVISReducer (class in coco_pipe.dim_reduction.reducers.neural) K k (coco_pipe.dim_reduction.config.IVISConfig attribute) k_range (coco_pipe.dim_reduction.config.EvaluationConfig attribute) kernel (coco_pipe.decoding.configs.SupportVectorMixin attribute) KNeighborsClassifierConfig (class in coco_pipe.decoding.configs) KNeighborsRegressorConfig (class in coco_pipe.decoding.configs) knn (coco_pipe.dim_reduction.config.PHATEConfig attribute) (coco_pipe.dim_reduction.reducers.neighbor.PHATEReducer attribute) L l1_ratio (coco_pipe.decoding.configs.ElasticNetConfig attribute) (coco_pipe.decoding.configs.LogisticRegressionConfig attribute) (coco_pipe.decoding.configs.SGDMixin attribute) l2_regularization (coco_pipe.decoding.configs.HistGradientBoostingRegressorConfig attribute) lam (coco_pipe.dim_reduction.config.TopologicalAEConfig attribute) (coco_pipe.dim_reduction.reducers.topology.TopologicalAEReducer attribute) lambda_1 (coco_pipe.decoding.configs.ARDRegressionConfig attribute) (coco_pipe.decoding.configs.BayesianRidgeConfig attribute) lambda_2 (coco_pipe.decoding.configs.ARDRegressionConfig attribute) (coco_pipe.decoding.configs.BayesianRidgeConfig attribute) lambda_init (coco_pipe.decoding.configs.BayesianRidgeConfig attribute) LassoConfig (class in coco_pipe.decoding.configs) lcmc() (in module coco_pipe) (in module coco_pipe.dim_reduction) (in module coco_pipe.dim_reduction.evaluation) (in module coco_pipe.dim_reduction.evaluation.metrics) LDAConfig (class in coco_pipe.decoding.configs) leaf_size (coco_pipe.decoding.configs.KNeighborsClassifierConfig attribute) (coco_pipe.decoding.configs.KNeighborsRegressorConfig attribute) learning_rate (coco_pipe.decoding.configs.AdaBoostClassifierConfig attribute) (coco_pipe.decoding.configs.AdaBoostRegressorConfig attribute) (coco_pipe.decoding.configs.GradientBoostingClassifierConfig attribute) (coco_pipe.decoding.configs.GradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.HistGradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.MLPClassifierConfig attribute) (coco_pipe.decoding.configs.MLPRegressorConfig attribute) (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.dim_reduction.config.TSNEConfig attribute) learning_rate_init (coco_pipe.decoding.configs.MLPClassifierConfig attribute) (coco_pipe.decoding.configs.MLPRegressorConfig attribute) LinearMixin (class in coco_pipe.decoding.configs) LinearRegressionConfig (class in coco_pipe.decoding.configs) list_estimators() (in module coco_pipe.decoding.registry) lle_method (coco_pipe.dim_reduction.config.LLEConfig attribute) LLEConfig (class in coco_pipe.dim_reduction.config) LLEReducer (class in coco_pipe) (class in coco_pipe.dim_reduction) (class in coco_pipe.dim_reduction.reducers) (class in coco_pipe.dim_reduction.reducers.manifold) load() (coco_pipe.BaseReducer class method) (coco_pipe.dim_reduction.BaseReducer class method) (coco_pipe.dim_reduction.core.DimReduction class method) (coco_pipe.dim_reduction.DimReduction class method) (coco_pipe.dim_reduction.reducers.base.BaseReducer class method) (coco_pipe.dim_reduction.reducers.BaseReducer class method) (coco_pipe.DimReduction class method) (coco_pipe.io.DataContainer class method) (coco_pipe.io.dataset.BaseDataset method) (coco_pipe.io.dataset.BIDSDataset method) (coco_pipe.io.dataset.EmbeddingDataset method) (coco_pipe.io.dataset.TabularDataset method) (coco_pipe.io.structures.DataContainer class method) load_data() (in module coco_pipe.io) (in module coco_pipe.io.load) load_mne_psd_functions() (in module coco_pipe.descriptors.extractors._psd) load_participants_tsv() (in module coco_pipe.io.utils) load_results() (coco_pipe.decoding.core.Experiment static method) (coco_pipe.decoding.Experiment static method) loading_mode (coco_pipe.io.BIDSConfig attribute) (coco_pipe.io.config.BIDSConfig attribute) logger (in module coco_pipe.decoding.core) (in module coco_pipe.io.dataset) (in module coco_pipe.io.structures) (in module coco_pipe.io.transform) (in module coco_pipe.io.utils) LogisticRegressionConfig (class in coco_pipe.decoding.configs) loss (coco_pipe.decoding.configs.AdaBoostRegressorConfig attribute) (coco_pipe.decoding.configs.GradientBoostingClassifierConfig attribute) (coco_pipe.decoding.configs.GradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.HistGradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.decoding.configs.SGDRegressorConfig attribute) loss_history_ (coco_pipe.dim_reduction.reducers.neighbor.ParametricUMAPReducer property) (coco_pipe.dim_reduction.reducers.topology.TopologicalAEReducer property) lp_epochs (coco_pipe.decoding.configs.LPFTConfig attribute) lp_lr (coco_pipe.decoding.configs.LPFTConfig attribute) LPFTConfig (class in coco_pipe.decoding.configs) lr (coco_pipe.decoding.configs.SkorchClassifierConfig attribute) (coco_pipe.dim_reduction.config.TopologicalAEConfig attribute) (coco_pipe.dim_reduction.reducers.topology.TopologicalAEReducer attribute) M make_failure_record() (in module coco_pipe.descriptors.extractors.base) make_strata() (in module coco_pipe.io.utils) match_edges (coco_pipe.dim_reduction.reducers.topology.TopologicalSignatureDistance attribute) max_bins (coco_pipe.decoding.configs.HistGradientBoostingRegressorConfig attribute) max_depth (coco_pipe.decoding.configs.DecisionTreeRegressorConfig attribute) (coco_pipe.decoding.configs.GradientBoostingClassifierConfig attribute) (coco_pipe.decoding.configs.GradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.HistGradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.TreeMixin attribute) max_epochs (coco_pipe.decoding.configs.SkorchClassifierConfig attribute) max_features (coco_pipe.decoding.configs.DecisionTreeRegressorConfig attribute) (coco_pipe.decoding.configs.GradientBoostingClassifierConfig attribute) (coco_pipe.decoding.configs.GradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.TreeMixin attribute) max_fun (coco_pipe.decoding.configs.MLPClassifierConfig attribute) (coco_pipe.decoding.configs.MLPRegressorConfig attribute) max_iter (coco_pipe.decoding.configs.HistGradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.LogisticRegressionConfig attribute) (coco_pipe.decoding.configs.MLPClassifierConfig attribute) (coco_pipe.decoding.configs.MLPRegressorConfig attribute) (coco_pipe.decoding.configs.RegularizedLinearMixin attribute) (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.decoding.configs.SupportVectorMixin attribute) (coco_pipe.dim_reduction.config.MDSConfig attribute) (coco_pipe.dim_reduction.config.TSNEConfig attribute) max_leaf_nodes (coco_pipe.decoding.configs.DecisionTreeRegressorConfig attribute) (coco_pipe.decoding.configs.GradientBoostingClassifierConfig attribute) (coco_pipe.decoding.configs.GradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.HistGradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.TreeMixin attribute) max_length (coco_pipe.decoding.configs.LPFTConfig attribute) max_n_peaks (coco_pipe.descriptors.configs.ParametricDescriptorConfig attribute) max_samples (coco_pipe.decoding.configs.ExtraTreesRegressorConfig attribute) (coco_pipe.decoding.configs.RandomForestClassifierConfig attribute) (coco_pipe.decoding.configs.RandomForestRegressorConfig attribute) MDSConfig (class in coco_pipe.dim_reduction.config) MDSReducer (class in coco_pipe) (class in coco_pipe.dim_reduction) (class in coco_pipe.dim_reduction.reducers) (class in coco_pipe.dim_reduction.reducers.manifold) mean_ (coco_pipe.io.SpatialWhitener attribute), [1] (coco_pipe.io.transform.SpatialWhitener attribute), [1] measure_kwargs (coco_pipe.descriptors.configs.ComplexityDescriptorConfig attribute) measures (coco_pipe.descriptors.configs.ComplexityDescriptorConfig attribute) message (coco_pipe.report.quality.CheckResult attribute), [1] meta (coco_pipe.descriptors.extractors._parametric_fit._ParametricFitBatch attribute), [1] (coco_pipe.io.DataContainer attribute), [1] (coco_pipe.io.structures.DataContainer attribute), [1] meta_columns (coco_pipe.io.config.TabularConfig attribute) (coco_pipe.io.dataset.TabularDataset attribute) (coco_pipe.io.TabularConfig attribute) metadata (coco_pipe.report.core.Report attribute) method (coco_pipe.decoding.configs.AdaBoostClassifierConfig attribute) (coco_pipe.decoding.configs.AdaBoostRegressorConfig attribute) (coco_pipe.decoding.configs.ARDRegressionConfig attribute) (coco_pipe.decoding.configs.BayesianRidgeConfig attribute) (coco_pipe.decoding.configs.DecisionTreeRegressorConfig attribute) (coco_pipe.decoding.configs.DummyClassifierConfig attribute) (coco_pipe.decoding.configs.DummyRegressorConfig attribute) (coco_pipe.decoding.configs.ElasticNetConfig attribute) (coco_pipe.decoding.configs.ExtraTreesRegressorConfig attribute) (coco_pipe.decoding.configs.FeatureSelectionConfig attribute) (coco_pipe.decoding.configs.GaussianNBConfig attribute) (coco_pipe.decoding.configs.GeneralizingEstimatorConfig attribute) (coco_pipe.decoding.configs.GradientBoostingClassifierConfig attribute) (coco_pipe.decoding.configs.GradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.HistGradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.KNeighborsClassifierConfig attribute) (coco_pipe.decoding.configs.KNeighborsRegressorConfig attribute) (coco_pipe.decoding.configs.LassoConfig attribute) (coco_pipe.decoding.configs.LDAConfig attribute) (coco_pipe.decoding.configs.LinearRegressionConfig attribute) (coco_pipe.decoding.configs.LogisticRegressionConfig attribute) (coco_pipe.decoding.configs.LPFTConfig attribute) (coco_pipe.decoding.configs.MLPClassifierConfig attribute) (coco_pipe.decoding.configs.MLPRegressorConfig attribute) (coco_pipe.decoding.configs.RandomForestClassifierConfig attribute) (coco_pipe.decoding.configs.RandomForestRegressorConfig attribute) (coco_pipe.decoding.configs.RidgeConfig attribute) (coco_pipe.decoding.configs.SGDClassifierConfig attribute) (coco_pipe.decoding.configs.SGDRegressorConfig attribute) (coco_pipe.decoding.configs.SkorchClassifierConfig attribute) (coco_pipe.decoding.configs.SlidingEstimatorConfig attribute) (coco_pipe.decoding.configs.SVCConfig attribute) (coco_pipe.decoding.configs.SVRConfig attribute) (coco_pipe.dim_reduction.config.DaskPCAConfig attribute) (coco_pipe.dim_reduction.config.DaskTruncatedSVDConfig attribute) (coco_pipe.dim_reduction.config.DMDConfig attribute) (coco_pipe.dim_reduction.config.IncrementalPCAConfig attribute) (coco_pipe.dim_reduction.config.IsomapConfig attribute) (coco_pipe.dim_reduction.config.IVISConfig attribute) (coco_pipe.dim_reduction.config.LLEConfig attribute) (coco_pipe.dim_reduction.config.MDSConfig attribute) (coco_pipe.dim_reduction.config.PacmapConfig attribute) (coco_pipe.dim_reduction.config.ParametricUMAPConfig attribute) (coco_pipe.dim_reduction.config.PCAConfig attribute) (coco_pipe.dim_reduction.config.PHATEConfig attribute) (coco_pipe.dim_reduction.config.SpectralEmbeddingConfig attribute) (coco_pipe.dim_reduction.config.TopologicalAEConfig attribute) (coco_pipe.dim_reduction.config.TRCAConfig attribute) (coco_pipe.dim_reduction.config.TrimapConfig attribute) (coco_pipe.dim_reduction.config.TSNEConfig attribute) (coco_pipe.dim_reduction.config.UMAPConfig attribute) (coco_pipe.dim_reduction.core.DimReduction attribute) (coco_pipe.dim_reduction.DimReduction attribute) (coco_pipe.DimReduction attribute) (coco_pipe.io.SpatialWhitener attribute) (coco_pipe.io.transform.SpatialWhitener attribute) METHODS (in module coco_pipe) (in module coco_pipe.dim_reduction) (in module coco_pipe.dim_reduction.config) MethodSelector (class in coco_pipe.dim_reduction.evaluation) (class in coco_pipe.dim_reduction.evaluation.core) metric (coco_pipe.decoding.configs.KNeighborsClassifierConfig attribute) (coco_pipe.decoding.configs.KNeighborsRegressorConfig attribute) (coco_pipe.dim_reduction.config.IsomapConfig attribute) (coco_pipe.dim_reduction.config.MDSConfig attribute) (coco_pipe.dim_reduction.config.ParametricUMAPConfig attribute) (coco_pipe.dim_reduction.config.UMAPConfig attribute) (coco_pipe.dim_reduction.reducers.neighbor.ParametricUMAPReducer attribute) metric_name (coco_pipe.report.quality.CheckResult attribute), [1] metric_params (coco_pipe.decoding.configs.KNeighborsClassifierConfig attribute) (coco_pipe.decoding.configs.KNeighborsRegressorConfig attribute) metric_records_ (coco_pipe.dim_reduction.core.DimReduction attribute), [1] (coco_pipe.dim_reduction.DimReduction attribute), [1] (coco_pipe.dim_reduction.evaluation.core.MethodSelector attribute), [1] (coco_pipe.dim_reduction.evaluation.MethodSelector attribute), [1] (coco_pipe.DimReduction attribute), [1] metric_value (coco_pipe.report.quality.CheckResult attribute), [1] metrics (coco_pipe.decoding.configs.ExperimentConfig attribute) (coco_pipe.decoding.ExperimentConfig attribute) (coco_pipe.descriptors.extractors._parametric_fit._ParametricFitBatch attribute), [1] (coco_pipe.dim_reduction.config.EvaluationConfig attribute) metrics_ (coco_pipe.dim_reduction.core.DimReduction attribute), [1] (coco_pipe.dim_reduction.DimReduction attribute), [1] (coco_pipe.DimReduction attribute), [1] MetricsTableElement (class in coco_pipe.report.core) min_denominator_power (coco_pipe.descriptors.configs.BandDescriptorConfig attribute) min_dist (coco_pipe.dim_reduction.config.ParametricUMAPConfig attribute) (coco_pipe.dim_reduction.config.UMAPConfig attribute) (coco_pipe.dim_reduction.reducers.neighbor.ParametricUMAPReducer attribute) min_impurity_decrease (coco_pipe.decoding.configs.DecisionTreeRegressorConfig attribute) (coco_pipe.decoding.configs.GradientBoostingClassifierConfig attribute) (coco_pipe.decoding.configs.GradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.TreeMixin attribute) min_samples_leaf (coco_pipe.decoding.configs.DecisionTreeRegressorConfig attribute) (coco_pipe.decoding.configs.GradientBoostingClassifierConfig attribute) (coco_pipe.decoding.configs.GradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.HistGradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.TreeMixin attribute) min_samples_split (coco_pipe.decoding.configs.DecisionTreeRegressorConfig attribute) (coco_pipe.decoding.configs.GradientBoostingClassifierConfig attribute) (coco_pipe.decoding.configs.GradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.TreeMixin attribute) min_weight_fraction_leaf (coco_pipe.decoding.configs.DecisionTreeRegressorConfig attribute) (coco_pipe.decoding.configs.GradientBoostingClassifierConfig attribute) (coco_pipe.decoding.configs.GradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.TreeMixin attribute) MLPClassifierConfig (class in coco_pipe.decoding.configs) MLPRegressorConfig (class in coco_pipe.decoding.configs) MN_ratio (coco_pipe.dim_reduction.config.PacmapConfig attribute) (coco_pipe.dim_reduction.reducers.neighbor.PacmapReducer attribute) mne (in module coco_pipe.io.utils) mode (coco_pipe.io.BIDSConfig attribute) (coco_pipe.io.config.BIDSConfig attribute) (coco_pipe.io.config.EmbeddingConfig attribute) (coco_pipe.io.config.TabularConfig attribute) (coco_pipe.io.dataset.BIDSDataset attribute) (coco_pipe.io.EmbeddingConfig attribute) (coco_pipe.io.TabularConfig attribute) model (coco_pipe.BaseReducer attribute), [1] (coco_pipe.dim_reduction.BaseReducer attribute), [1] (coco_pipe.dim_reduction.config.IVISConfig attribute) (coco_pipe.dim_reduction.IncrementalPCAReducer attribute) (coco_pipe.dim_reduction.IsomapReducer attribute) (coco_pipe.dim_reduction.LLEReducer attribute) (coco_pipe.dim_reduction.MDSReducer attribute) (coco_pipe.dim_reduction.PCAReducer attribute) (coco_pipe.dim_reduction.reducers.base.BaseReducer attribute), [1] (coco_pipe.dim_reduction.reducers.BaseReducer attribute), [1] (coco_pipe.dim_reduction.reducers.IncrementalPCAReducer attribute) (coco_pipe.dim_reduction.reducers.IsomapReducer attribute) (coco_pipe.dim_reduction.reducers.linear.DaskPCAReducer attribute) (coco_pipe.dim_reduction.reducers.linear.DaskTruncatedSVDReducer attribute) (coco_pipe.dim_reduction.reducers.linear.IncrementalPCAReducer attribute) (coco_pipe.dim_reduction.reducers.linear.PCAReducer attribute) (coco_pipe.dim_reduction.reducers.LLEReducer attribute) (coco_pipe.dim_reduction.reducers.manifold.IsomapReducer attribute) (coco_pipe.dim_reduction.reducers.manifold.LLEReducer attribute) (coco_pipe.dim_reduction.reducers.manifold.MDSReducer attribute) (coco_pipe.dim_reduction.reducers.manifold.SpectralEmbeddingReducer attribute) (coco_pipe.dim_reduction.reducers.MDSReducer attribute) (coco_pipe.dim_reduction.reducers.neighbor.PacmapReducer attribute) (coco_pipe.dim_reduction.reducers.neighbor.ParametricUMAPReducer attribute) (coco_pipe.dim_reduction.reducers.neighbor.PHATEReducer attribute) (coco_pipe.dim_reduction.reducers.neighbor.TrimapReducer attribute) (coco_pipe.dim_reduction.reducers.neighbor.TSNEReducer attribute) (coco_pipe.dim_reduction.reducers.neighbor.UMAPReducer attribute) (coco_pipe.dim_reduction.reducers.neural.IVISReducer attribute) (coco_pipe.dim_reduction.reducers.PCAReducer attribute) (coco_pipe.dim_reduction.reducers.spatiotemporal.DMDReducer attribute) (coco_pipe.dim_reduction.reducers.spatiotemporal.TRCAReducer attribute) (coco_pipe.dim_reduction.reducers.SpectralEmbeddingReducer attribute) (coco_pipe.dim_reduction.reducers.topology.TopologicalAEReducer attribute) (coco_pipe.dim_reduction.reducers.TSNEReducer attribute) (coco_pipe.dim_reduction.SpectralEmbeddingReducer attribute) (coco_pipe.dim_reduction.TSNEReducer attribute) (coco_pipe.IncrementalPCAReducer attribute) (coco_pipe.IsomapReducer attribute) (coco_pipe.LLEReducer attribute) (coco_pipe.MDSReducer attribute) (coco_pipe.PCAReducer attribute) (coco_pipe.SpectralEmbeddingReducer attribute) (coco_pipe.TSNEReducer attribute) model_config (coco_pipe.decoding.configs.BaseEstimatorConfig attribute) (coco_pipe.report.config.ProvenanceConfig attribute) (coco_pipe.report.config.ReportConfig attribute) model_name (coco_pipe.fm.cbramod.CBRAModRegressionPipeline attribute) (coco_pipe.fm.cbramod.pipeline.CBRAModRegressionPipeline attribute) (coco_pipe.fm.CBRAModRegressionPipeline attribute) models (coco_pipe.decoding.configs.ExperimentConfig attribute) (coco_pipe.decoding.ExperimentConfig attribute) modes_ (coco_pipe.dim_reduction.reducers.spatiotemporal.DMDReducer property) module coco_pipe coco_pipe.decoding coco_pipe.decoding.configs coco_pipe.decoding.core coco_pipe.decoding.registry coco_pipe.decoding.utils coco_pipe.descriptors coco_pipe.descriptors.configs coco_pipe.descriptors.core coco_pipe.descriptors.extractors coco_pipe.descriptors.extractors._parametric_fit coco_pipe.descriptors.extractors._psd coco_pipe.descriptors.extractors.base coco_pipe.descriptors.extractors.complexity coco_pipe.descriptors.extractors.parametric coco_pipe.descriptors.extractors.spectral coco_pipe.descriptors.validation coco_pipe.dim_reduction coco_pipe.dim_reduction.analysis coco_pipe.dim_reduction.config coco_pipe.dim_reduction.core coco_pipe.dim_reduction.evaluation coco_pipe.dim_reduction.evaluation.core coco_pipe.dim_reduction.evaluation.geometry coco_pipe.dim_reduction.evaluation.metrics coco_pipe.dim_reduction.evaluation.velocity coco_pipe.dim_reduction.reducers coco_pipe.dim_reduction.reducers.base coco_pipe.dim_reduction.reducers.linear coco_pipe.dim_reduction.reducers.manifold coco_pipe.dim_reduction.reducers.neighbor coco_pipe.dim_reduction.reducers.neural coco_pipe.dim_reduction.reducers.spatiotemporal coco_pipe.dim_reduction.reducers.topology coco_pipe.fm coco_pipe.fm.cbramod coco_pipe.fm.cbramod.pipeline coco_pipe.io coco_pipe.io.config coco_pipe.io.dataset coco_pipe.io.load coco_pipe.io.structures coco_pipe.io.transform coco_pipe.io.utils coco_pipe.report coco_pipe.report.api coco_pipe.report.config coco_pipe.report.core coco_pipe.report.engine coco_pipe.report.provenance coco_pipe.report.quality coco_pipe.utils coco_pipe.viz coco_pipe.viz.dim_reduction coco_pipe.viz.plotly_utils coco_pipe.viz.plots coco_pipe.viz.utils MODULE_DIR (in module coco_pipe.report.engine) module_name (coco_pipe.decoding.configs.SkorchClassifierConfig attribute) momentum (coco_pipe.decoding.configs.MLPClassifierConfig attribute) (coco_pipe.decoding.configs.MLPRegressorConfig attribute) monotonic_cst (coco_pipe.decoding.configs.HistGradientBoostingRegressorConfig attribute) moving_average() (in module coco_pipe.dim_reduction.evaluation) (in module coco_pipe.dim_reduction.evaluation.geometry) multiclass (coco_pipe.decoding.configs.LogisticRegressionConfig attribute) multioutput (coco_pipe.fm.cbramod.FoundationRegressor attribute) (coco_pipe.fm.cbramod.pipeline.FoundationRegressor attribute) (coco_pipe.fm.FoundationRegressor attribute) N n_bands (coco_pipe.dim_reduction.reducers.spatiotemporal.TRCAReducer property) n_classes (coco_pipe.dim_reduction.reducers.spatiotemporal.TRCAReducer property) n_components (coco_pipe.BaseReducer attribute), [1] (coco_pipe.decoding.configs.LDAConfig attribute) (coco_pipe.dim_reduction.BaseReducer attribute), [1] (coco_pipe.dim_reduction.config.BaseReducerConfig attribute) (coco_pipe.dim_reduction.core.DimReduction attribute) (coco_pipe.dim_reduction.DimReduction attribute) (coco_pipe.dim_reduction.reducers.base.BaseReducer attribute), [1] (coco_pipe.dim_reduction.reducers.BaseReducer attribute), [1] (coco_pipe.DimReduction attribute) (coco_pipe.io.SpatialWhitener attribute) (coco_pipe.io.transform.SpatialWhitener attribute) n_epochs (coco_pipe.dim_reduction.config.ParametricUMAPConfig attribute) (coco_pipe.dim_reduction.config.UMAPConfig attribute) (coco_pipe.dim_reduction.reducers.neighbor.ParametricUMAPReducer attribute) n_epochs_without_progress (coco_pipe.dim_reduction.config.IVISConfig attribute) n_estimators (coco_pipe.decoding.configs.AdaBoostClassifierConfig attribute) (coco_pipe.decoding.configs.AdaBoostRegressorConfig attribute) (coco_pipe.decoding.configs.GradientBoostingClassifierConfig attribute) (coco_pipe.decoding.configs.GradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.TreeMixin attribute) n_features (coco_pipe.decoding.configs.FeatureSelectionConfig attribute) n_init (coco_pipe.dim_reduction.config.MDSConfig attribute) n_inliers (coco_pipe.dim_reduction.config.TrimapConfig attribute) (coco_pipe.dim_reduction.reducers.neighbor.TrimapReducer attribute) n_iter (coco_pipe.decoding.configs.ARDRegressionConfig attribute) (coco_pipe.decoding.configs.BayesianRidgeConfig attribute) (coco_pipe.decoding.configs.TuningConfig attribute) n_iter_no_change (coco_pipe.decoding.configs.GradientBoostingClassifierConfig attribute) (coco_pipe.decoding.configs.GradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.HistGradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.MLPClassifierConfig attribute) (coco_pipe.decoding.configs.MLPRegressorConfig attribute) (coco_pipe.decoding.configs.SGDMixin attribute) n_jobs (coco_pipe.decoding.configs.ExperimentConfig attribute) (coco_pipe.decoding.configs.GeneralizingEstimatorConfig attribute) (coco_pipe.decoding.configs.KNeighborsClassifierConfig attribute) (coco_pipe.decoding.configs.KNeighborsRegressorConfig attribute) (coco_pipe.decoding.configs.LinearMixin attribute) (coco_pipe.decoding.configs.LogisticRegressionConfig attribute) (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.decoding.configs.SlidingEstimatorConfig attribute) (coco_pipe.decoding.configs.TreeMixin attribute) (coco_pipe.decoding.configs.TuningConfig attribute) (coco_pipe.decoding.ExperimentConfig attribute) (coco_pipe.descriptors.configs.DescriptorRuntimeConfig attribute) n_modes_ (coco_pipe.dim_reduction.reducers.spatiotemporal.DMDReducer property) n_neighbors (coco_pipe.decoding.configs.KNeighborsClassifierConfig attribute) (coco_pipe.decoding.configs.KNeighborsRegressorConfig attribute) (coco_pipe.dim_reduction.config.IsomapConfig attribute) (coco_pipe.dim_reduction.config.LLEConfig attribute) (coco_pipe.dim_reduction.config.PacmapConfig attribute) (coco_pipe.dim_reduction.config.ParametricUMAPConfig attribute) (coco_pipe.dim_reduction.config.UMAPConfig attribute) (coco_pipe.dim_reduction.reducers.neighbor.PacmapReducer attribute) (coco_pipe.dim_reduction.reducers.neighbor.ParametricUMAPReducer attribute) n_outliers (coco_pipe.dim_reduction.config.TrimapConfig attribute) (coco_pipe.dim_reduction.reducers.neighbor.TrimapReducer attribute) n_random (coco_pipe.dim_reduction.config.TrimapConfig attribute) (coco_pipe.dim_reduction.reducers.neighbor.TrimapReducer attribute) n_splits (coco_pipe.decoding.configs.CVConfig attribute) name (coco_pipe.BaseReducer property) (coco_pipe.dim_reduction.BaseReducer property) (coco_pipe.dim_reduction.reducers.base.BaseReducer property) (coco_pipe.dim_reduction.reducers.BaseReducer property) needs_parametric_fit() (coco_pipe.descriptors.extractors.spectral.BandDescriptorExtractor method) nesterovs_momentum (coco_pipe.decoding.configs.MLPClassifierConfig attribute) (coco_pipe.decoding.configs.MLPRegressorConfig attribute) nn_backend (coco_pipe.dim_reduction.config.PacmapConfig attribute) (coco_pipe.dim_reduction.reducers.neighbor.PacmapReducer attribute) O obs_chunk (coco_pipe.descriptors.configs.DescriptorRuntimeConfig attribute) obs_table() (coco_pipe.io.DataContainer method) (coco_pipe.io.structures.DataContainer method) on_error (coco_pipe.descriptors.configs.DescriptorRuntimeConfig attribute) oob_score (coco_pipe.decoding.configs.ExtraTreesRegressorConfig attribute) (coco_pipe.decoding.configs.RandomForestClassifierConfig attribute) (coco_pipe.decoding.configs.RandomForestRegressorConfig attribute) opt (coco_pipe.dim_reduction.config.DMDConfig attribute) optimizer (coco_pipe.decoding.configs.SkorchClassifierConfig attribute) os_platform (coco_pipe.report.config.ProvenanceConfig attribute) output_dir (coco_pipe.decoding.configs.ExperimentConfig attribute) (coco_pipe.decoding.ExperimentConfig attribute) outputs (coco_pipe.descriptors.configs.BandDescriptorConfig attribute) (coco_pipe.descriptors.configs.ParametricDescriptorConfig attribute) P p (coco_pipe.decoding.configs.KNeighborsClassifierConfig attribute) (coco_pipe.decoding.configs.KNeighborsRegressorConfig attribute) (coco_pipe.dim_reduction.config.IsomapConfig attribute) (coco_pipe.dim_reduction.reducers.topology.TopologicalSignatureDistance attribute) PacmapConfig (class in coco_pipe.dim_reduction.config) PacmapReducer (class in coco_pipe.dim_reduction.reducers.neighbor) page_size (coco_pipe.report.core.InteractiveTableElement attribute) parametric (coco_pipe.descriptors.configs.DescriptorFamiliesConfig attribute), [1] parametric_fit_requirements() (coco_pipe.descriptors.extractors.base.BasePSDDescriptorExtractor method) (coco_pipe.descriptors.extractors.BasePSDDescriptorExtractor method) (coco_pipe.descriptors.extractors.parametric.ParametricDescriptorExtractor method) (coco_pipe.descriptors.extractors.spectral.BandDescriptorExtractor method) ParametricDescriptorConfig (class in coco_pipe.descriptors.configs) ParametricDescriptorExtractor (class in coco_pipe.descriptors.extractors.parametric) ParametricUMAPConfig (class in coco_pipe.dim_reduction.config) ParametricUMAPReducer (class in coco_pipe.dim_reduction.reducers.neighbor) params (coco_pipe.BaseReducer attribute), [1] (coco_pipe.dim_reduction.BaseReducer attribute), [1] (coco_pipe.dim_reduction.reducers.base.BaseReducer attribute), [1] (coco_pipe.dim_reduction.reducers.BaseReducer attribute), [1] partial_fit() (coco_pipe.dim_reduction.IncrementalPCAReducer method) (coco_pipe.dim_reduction.reducers.IncrementalPCAReducer method) (coco_pipe.dim_reduction.reducers.linear.IncrementalPCAReducer method) (coco_pipe.IncrementalPCAReducer method) path (coco_pipe.io.BaseDatasetConfig attribute) (coco_pipe.io.config.BaseDatasetConfig attribute) (coco_pipe.io.dataset.EmbeddingDataset attribute) (coco_pipe.io.dataset.TabularDataset attribute) pattern (coco_pipe.io.config.EmbeddingConfig attribute) (coco_pipe.io.EmbeddingConfig attribute) PCAConfig (class in coco_pipe.dim_reduction.config) PCAReducer (class in coco_pipe) (class in coco_pipe.dim_reduction) (class in coco_pipe.dim_reduction.reducers) (class in coco_pipe.dim_reduction.reducers.linear) peak_width_limits (coco_pipe.descriptors.configs.ParametricDescriptorConfig attribute) penalty (coco_pipe.decoding.configs.LogisticRegressionConfig attribute) (coco_pipe.decoding.configs.SGDMixin attribute) periodic_psds (coco_pipe.descriptors.extractors._parametric_fit._ParametricFitBatch attribute), [1] perplexity (coco_pipe.dim_reduction.config.TSNEConfig attribute) perturbation_importance() (in module coco_pipe.dim_reduction.analysis) PHATEConfig (class in coco_pipe.dim_reduction.config) PHATEReducer (class in coco_pipe.dim_reduction.reducers.neighbor) plot_bar() (in module coco_pipe.viz) (in module coco_pipe.viz.plots) plot_channel_traces_interactive() (in module coco_pipe.viz) (in module coco_pipe.viz.plotly_utils) plot_eigenvalues() (in module coco_pipe.viz) (in module coco_pipe.viz.dim_reduction) plot_embedding() (in module coco_pipe.viz) (in module coco_pipe.viz.dim_reduction) plot_embedding_interactive() (in module coco_pipe.viz.plotly_utils) plot_feature_correlation_heatmap() (in module coco_pipe.viz) (in module coco_pipe.viz.dim_reduction) plot_feature_correlation_heatmap_interactive() (in module coco_pipe.viz.plotly_utils) plot_feature_importance() (in module coco_pipe.viz) (in module coco_pipe.viz.dim_reduction) plot_feature_importance_interactive() (in module coco_pipe.viz.plotly_utils) plot_interpretation() (in module coco_pipe.viz) (in module coco_pipe.viz.dim_reduction) plot_interpretation_interactive() (in module coco_pipe.viz.plotly_utils) plot_local_metrics() (in module coco_pipe.viz) (in module coco_pipe.viz.dim_reduction) plot_loss_history() (in module coco_pipe.viz) (in module coco_pipe.viz.dim_reduction) plot_loss_history_interactive() (in module coco_pipe.viz.plotly_utils) plot_metric_details() (in module coco_pipe.viz.plotly_utils) plot_metrics() (in module coco_pipe.viz) (in module coco_pipe.viz.dim_reduction) plot_radar_comparison() (in module coco_pipe.viz.plotly_utils) plot_raw_preview() (in module coco_pipe.viz.plotly_utils) plot_scatter2d() (in module coco_pipe.viz) (in module coco_pipe.viz.plots) plot_scree_interactive() (in module coco_pipe.viz.plotly_utils) plot_shepard_diagram() (in module coco_pipe.viz) (in module coco_pipe.viz.dim_reduction) plot_shepard_interactive() (in module coco_pipe.viz.plotly_utils) plot_streamlines() (in module coco_pipe.viz) (in module coco_pipe.viz.dim_reduction) plot_streamlines_interactive() (in module coco_pipe.viz.plotly_utils) plot_topomap() (in module coco_pipe.viz) (in module coco_pipe.viz.plots) plot_trajectory() (in module coco_pipe.viz) (in module coco_pipe.viz.dim_reduction) plot_trajectory_interactive() (in module coco_pipe.viz.plotly_utils) plot_trajectory_metric_series() (in module coco_pipe.viz) (in module coco_pipe.viz.dim_reduction) plot_trajectory_metric_series_interactive() (in module coco_pipe.viz.plotly_utils) PlotlyElement (class in coco_pipe.report.core) pool_channels() (coco_pipe.DescriptorPipeline method) (coco_pipe.descriptors.core.DescriptorPipeline method) (coco_pipe.descriptors.DescriptorPipeline method) position (coco_pipe.decoding.configs.GeneralizingEstimatorConfig attribute) (coco_pipe.decoding.configs.SlidingEstimatorConfig attribute) positive (coco_pipe.decoding.configs.LinearRegressionConfig attribute) (coco_pipe.decoding.configs.RegularizedLinearMixin attribute) power_t (coco_pipe.decoding.configs.MLPClassifierConfig attribute) (coco_pipe.decoding.configs.MLPRegressorConfig attribute) (coco_pipe.decoding.configs.SGDMixin attribute) precision (coco_pipe.DescriptorConfig attribute), [1] (coco_pipe.descriptors.configs.DescriptorConfig attribute), [1] (coco_pipe.descriptors.DescriptorConfig attribute), [1] precompute (coco_pipe.decoding.configs.ElasticNetConfig attribute) (coco_pipe.decoding.configs.LassoConfig attribute) predict() (coco_pipe.fm.cbramod.FoundationRegressor method) (coco_pipe.fm.cbramod.pipeline.FoundationRegressor method) (coco_pipe.fm.FoundationRegressor method) prepare_embedding_frame() (in module coco_pipe.viz.utils) prepare_feature_scores() (in module coco_pipe.viz.utils) prepare_interpretation_frame() (in module coco_pipe.viz.utils) prepare_metrics_frame() (in module coco_pipe.viz.utils) priors (coco_pipe.decoding.configs.GaussianNBConfig attribute) (coco_pipe.decoding.configs.LDAConfig attribute) probability (coco_pipe.decoding.configs.SVCConfig attribute) processing (coco_pipe.io.config.EmbeddingConfig attribute) (coco_pipe.io.EmbeddingConfig attribute) provenance (coco_pipe.report.config.ReportConfig attribute) ProvenanceConfig (class in coco_pipe.report.config) psd_groups (coco_pipe.DescriptorPipeline attribute), [1] (coco_pipe.descriptors.core.DescriptorPipeline attribute), [1] (coco_pipe.descriptors.DescriptorPipeline attribute), [1] psd_method (coco_pipe.descriptors.configs.BandDescriptorConfig attribute) (coco_pipe.descriptors.configs.ParametricDescriptorConfig attribute) psd_request() (coco_pipe.descriptors.extractors.base.BasePSDDescriptorExtractor method) (coco_pipe.descriptors.extractors.BasePSDDescriptorExtractor method) (coco_pipe.descriptors.extractors.parametric.ParametricDescriptorExtractor method) (coco_pipe.descriptors.extractors.spectral.BandDescriptorExtractor method) python_version (coco_pipe.report.config.ProvenanceConfig attribute) Q quality_metadata_ (coco_pipe.dim_reduction.core.DimReduction attribute), [1] (coco_pipe.dim_reduction.DimReduction attribute), [1] (coco_pipe.DimReduction attribute), [1] quantile (coco_pipe.decoding.configs.DummyRegressorConfig attribute) R random_state (coco_pipe.decoding.configs.BaseEstimatorConfig attribute) (coco_pipe.decoding.configs.CVConfig attribute) (coco_pipe.decoding.configs.DecisionTreeRegressorConfig attribute) (coco_pipe.decoding.configs.HistGradientBoostingRegressorConfig attribute) (coco_pipe.decoding.utils.SimpleSplit attribute) (coco_pipe.dim_reduction.config.StochasticReducerConfig attribute) (coco_pipe.dim_reduction.core.DimReduction property) (coco_pipe.dim_reduction.DimReduction property) (coco_pipe.DimReduction property) RandomForestClassifierConfig (class in coco_pipe.decoding.configs) RandomForestRegressorConfig (class in coco_pipe.decoding.configs) rank_methods() (coco_pipe.dim_reduction.evaluation.core.MethodSelector method) (coco_pipe.dim_reduction.evaluation.MethodSelector method) ratio_pairs (coco_pipe.descriptors.configs.BandDescriptorConfig attribute) raw (coco_pipe.decoding.core.ExperimentResult attribute) read_bids_entry() (in module coco_pipe.io.utils) read_raw_bids (in module coco_pipe.io.utils) reader (coco_pipe.io.dataset.EmbeddingDataset attribute) reconstructed_data_ (coco_pipe.dim_reduction.reducers.spatiotemporal.DMDReducer property) reconstruction_error_ (coco_pipe.dim_reduction.IsomapReducer property) (coco_pipe.dim_reduction.LLEReducer property) (coco_pipe.dim_reduction.reducers.IsomapReducer property) (coco_pipe.dim_reduction.reducers.LLEReducer property) (coco_pipe.dim_reduction.reducers.manifold.IsomapReducer property) (coco_pipe.dim_reduction.reducers.manifold.LLEReducer property) (coco_pipe.IsomapReducer property) (coco_pipe.LLEReducer property) reducer (coco_pipe.dim_reduction.core.DimReduction attribute), [1] (coco_pipe.dim_reduction.DimReduction attribute), [1] (coco_pipe.DimReduction attribute), [1] reducer_kwargs (coco_pipe.dim_reduction.core.DimReduction attribute) (coco_pipe.dim_reduction.DimReduction attribute) (coco_pipe.DimReduction attribute) reducers (coco_pipe.dim_reduction.evaluation.core.MethodSelector attribute) (coco_pipe.dim_reduction.evaluation.MethodSelector attribute) register_estimator() (in module coco_pipe.decoding) (in module coco_pipe.decoding.registry) registry_id (coco_pipe.report.core.InteractiveTableElement attribute) (coco_pipe.report.core.PlotlyElement attribute) RegularizedLinearMixin (class in coco_pipe.decoding.configs) render() (coco_pipe.report.core.ContainerElement method) (coco_pipe.report.core.Element method) (coco_pipe.report.core.HtmlElement method) (coco_pipe.report.core.ImageElement method) (coco_pipe.report.core.InteractiveTableElement method) (coco_pipe.report.core.PlotlyElement method) (coco_pipe.report.core.Report method) (coco_pipe.report.core.Section method) (coco_pipe.report.core.TableElement method) render_children() (coco_pipe.report.core.ContainerElement method) render_template() (in module coco_pipe.report.engine) Report (class in coco_pipe.report.core) ReportConfig (class in coco_pipe.report.config) requested_device (coco_pipe.dim_reduction.reducers.topology.TopologicalAEReducer attribute) require_channel_names (coco_pipe.descriptors.configs.DescriptorInputConfig attribute) require_sfreq (coco_pipe.descriptors.configs.DescriptorInputConfig attribute) results (coco_pipe.decoding.core.Experiment attribute) (coco_pipe.decoding.Experiment attribute) RidgeConfig (class in coco_pipe.decoding.configs) rms_scale() (coco_pipe.io.DataContainer method) (coco_pipe.io.structures.DataContainer method) root (coco_pipe.io.dataset.BIDSDataset attribute) row_quality_score() (in module coco_pipe.io.utils) run (coco_pipe.io.config.EmbeddingConfig attribute) (coco_pipe.io.EmbeddingConfig attribute) run() (coco_pipe.decoding.core.Experiment method) (coco_pipe.decoding.Experiment method) (coco_pipe.fm.cbramod.CBRAModRegressionPipeline method) (coco_pipe.fm.cbramod.pipeline.CBRAModRegressionPipeline method) (coco_pipe.fm.CBRAModRegressionPipeline method) run_params (coco_pipe.report.config.ReportConfig attribute) runs (coco_pipe.io.dataset.BIDSDataset attribute) runtime (coco_pipe.DescriptorConfig attribute), [1] (coco_pipe.descriptors.configs.DescriptorConfig attribute), [1] (coco_pipe.descriptors.DescriptorConfig attribute), [1] S sample_indices() (in module coco_pipe.io.utils) save() (coco_pipe.BaseReducer method) (coco_pipe.dim_reduction.BaseReducer method) (coco_pipe.dim_reduction.core.DimReduction method) (coco_pipe.dim_reduction.DimReduction method) (coco_pipe.dim_reduction.reducers.base.BaseReducer method) (coco_pipe.dim_reduction.reducers.BaseReducer method) (coco_pipe.dim_reduction.reducers.neighbor.ParametricUMAPReducer method) (coco_pipe.DimReduction method) (coco_pipe.io.DataContainer method) (coco_pipe.io.structures.DataContainer method) (coco_pipe.report.core.Report method) save_results() (coco_pipe.decoding.core.Experiment method) (coco_pipe.decoding.Experiment method) score() (coco_pipe.dim_reduction.core.DimReduction method) (coco_pipe.dim_reduction.DimReduction method) (coco_pipe.DimReduction method) scoring (coco_pipe.decoding.configs.FeatureSelectionConfig attribute) (coco_pipe.decoding.configs.GeneralizingEstimatorConfig attribute) (coco_pipe.decoding.configs.HistGradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.SlidingEstimatorConfig attribute) (coco_pipe.decoding.configs.TuningConfig attribute) search_type (coco_pipe.decoding.configs.TuningConfig attribute) Section (class in coco_pipe.report.core) select() (coco_pipe.io.DataContainer method) (coco_pipe.io.structures.DataContainer method) select_kwargs (coco_pipe.io.config.TabularConfig attribute) (coco_pipe.io.dataset.TabularDataset attribute) (coco_pipe.io.TabularConfig attribute) selection (coco_pipe.decoding.configs.ElasticNetConfig attribute) (coco_pipe.decoding.configs.LassoConfig attribute) selection_k (coco_pipe.dim_reduction.config.EvaluationConfig attribute) selection_metric (coco_pipe.dim_reduction.config.EvaluationConfig attribute) selector_columns (coco_pipe.report.core.InteractiveTableElement attribute) sep (coco_pipe.io.config.TabularConfig attribute) (coco_pipe.io.dataset.TabularDataset attribute) (coco_pipe.io.TabularConfig attribute) separation_method (coco_pipe.dim_reduction.config.EvaluationConfig attribute) session (coco_pipe.io.BIDSConfig attribute) (coco_pipe.io.config.BIDSConfig attribute) (coco_pipe.io.dataset.BIDSDataset attribute) set_op_mix_ratio (coco_pipe.dim_reduction.config.UMAPConfig attribute) severity (coco_pipe.report.quality.CheckResult attribute), [1] sfreq (coco_pipe.dim_reduction.config.TRCAConfig attribute) (coco_pipe.dim_reduction.reducers.spatiotemporal.TRCAReducer attribute) SGDClassifierConfig (class in coco_pipe.decoding.configs) SGDMixin (class in coco_pipe.decoding.configs) SGDRegressorConfig (class in coco_pipe.decoding.configs) shape (coco_pipe.io.DataContainer property) (coco_pipe.io.structures.DataContainer property) sheet_name (coco_pipe.io.config.TabularConfig attribute) (coco_pipe.io.dataset.TabularDataset attribute) (coco_pipe.io.TabularConfig attribute) shepard_diagram_data() (in module coco_pipe) (in module coco_pipe.dim_reduction) (in module coco_pipe.dim_reduction.evaluation) (in module coco_pipe.dim_reduction.evaluation.metrics) shrinkage (coco_pipe.decoding.configs.LDAConfig attribute) shrinking (coco_pipe.decoding.configs.SupportVectorMixin attribute) shuffle (coco_pipe.decoding.configs.CVConfig attribute) (coco_pipe.decoding.configs.MLPClassifierConfig attribute) (coco_pipe.decoding.configs.MLPRegressorConfig attribute) (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.decoding.utils.SimpleSplit attribute) signal_extractors (coco_pipe.DescriptorPipeline attribute), [1] (coco_pipe.descriptors.core.DescriptorPipeline attribute), [1] (coco_pipe.descriptors.DescriptorPipeline attribute), [1] SimpleSplit (class in coco_pipe.decoding.utils) SklearnWrapper (class in coco_pipe.io) (class in coco_pipe.io.transform) SkorchClassifierConfig (class in coco_pipe.decoding.configs) SlidingEstimatorConfig (class in coco_pipe.decoding.configs) smart_reader() (in module coco_pipe.io.utils) solver (coco_pipe.decoding.configs.LDAConfig attribute) (coco_pipe.decoding.configs.LogisticRegressionConfig attribute) (coco_pipe.decoding.configs.MLPClassifierConfig attribute) (coco_pipe.decoding.configs.RegularizedLinearMixin attribute) source (coco_pipe.report.config.ProvenanceConfig attribute) SpatialWhitener (class in coco_pipe.io) (class in coco_pipe.io.transform) SpectralEmbeddingConfig (class in coco_pipe.dim_reduction.config) SpectralEmbeddingReducer (class in coco_pipe) (class in coco_pipe.dim_reduction) (class in coco_pipe.dim_reduction.reducers) (class in coco_pipe.dim_reduction.reducers.manifold) split() (coco_pipe.decoding.utils._CVWithGroups method) (coco_pipe.decoding.utils.SimpleSplit method) split_column() (in module coco_pipe.io.utils) splitter (coco_pipe.decoding.configs.DecisionTreeRegressorConfig attribute) spread (coco_pipe.dim_reduction.config.UMAPConfig attribute) src (coco_pipe.report.core.ImageElement attribute) stack() (coco_pipe.io.DataContainer method) (coco_pipe.io.structures.DataContainer method) status (coco_pipe.report.core.Section attribute) (coco_pipe.report.quality.CheckResult attribute), [1] StochasticReducerConfig (class in coco_pipe.dim_reduction.config) store_covariance (coco_pipe.decoding.configs.LDAConfig attribute) strategy (coco_pipe.decoding.configs.CVConfig attribute) (coco_pipe.decoding.configs.DummyClassifierConfig attribute) (coco_pipe.decoding.configs.DummyRegressorConfig attribute) stratify (coco_pipe.decoding.utils.SimpleSplit attribute) stress_ (coco_pipe.dim_reduction.MDSReducer property) (coco_pipe.dim_reduction.reducers.manifold.MDSReducer property) (coco_pipe.dim_reduction.reducers.MDSReducer property) (coco_pipe.MDSReducer property) strict_reshaping (coco_pipe.io.dataset.TabularDataset attribute) stride (coco_pipe.io.BIDSConfig attribute) (coco_pipe.io.config.BIDSConfig attribute) (coco_pipe.io.dataset.BIDSDataset attribute) subject_key (coco_pipe.io.dataset.BIDSDataset attribute) subject_metadata_df (coco_pipe.io.dataset.BIDSDataset attribute) subjects (coco_pipe.io.BaseDatasetConfig attribute) (coco_pipe.io.config.BaseDatasetConfig attribute) (coco_pipe.io.dataset.BIDSDataset attribute) (coco_pipe.io.dataset.EmbeddingDataset attribute) subsample (coco_pipe.decoding.configs.GradientBoostingClassifierConfig attribute) (coco_pipe.decoding.configs.GradientBoostingRegressorConfig attribute) suffix (coco_pipe.io.BIDSConfig attribute) (coco_pipe.io.config.BIDSConfig attribute) (coco_pipe.io.dataset.BIDSDataset attribute) summary() (coco_pipe.decoding.core.ExperimentResult method) supervise_metric (coco_pipe.dim_reduction.config.IVISConfig attribute) SupportVectorMixin (class in coco_pipe.decoding.configs) SVCConfig (class in coco_pipe.decoding.configs) svd_rank (coco_pipe.dim_reduction.reducers.spatiotemporal.DMDReducer property) svd_solver (coco_pipe.dim_reduction.config.DaskPCAConfig attribute) (coco_pipe.dim_reduction.config.PCAConfig attribute) (coco_pipe.dim_reduction.reducers.linear.DaskPCAReducer attribute), [1] SVRConfig (class in coco_pipe.decoding.configs) T t (coco_pipe.dim_reduction.config.PHATEConfig attribute) (coco_pipe.dim_reduction.reducers.neighbor.PHATEReducer attribute) table_id (coco_pipe.report.core.TableElement attribute) TableElement (class in coco_pipe.report.core) TabularConfig (class in coco_pipe.io) (class in coco_pipe.io.config) TabularDataset (class in coco_pipe.io.dataset) tag (coco_pipe.decoding.configs.ExperimentConfig attribute) (coco_pipe.decoding.ExperimentConfig attribute) tags (coco_pipe.report.core.Section attribute) target_col (coco_pipe.io.config.TabularConfig attribute) (coco_pipe.io.dataset.BIDSDataset attribute) (coco_pipe.io.dataset.TabularDataset attribute) (coco_pipe.io.TabularConfig attribute) task (coco_pipe.decoding.configs.ExperimentConfig attribute) (coco_pipe.decoding.ExperimentConfig attribute) (coco_pipe.io.BIDSConfig attribute) (coco_pipe.io.config.BIDSConfig attribute) (coco_pipe.io.config.EmbeddingConfig attribute) (coco_pipe.io.dataset.BIDSDataset attribute) (coco_pipe.io.EmbeddingConfig attribute) TEMPLATE_DIR (in module coco_pipe.report.engine) temporal (coco_pipe.decoding.configs.ExperimentConfig attribute) (coco_pipe.decoding.ExperimentConfig attribute) TemporalConfig (class in coco_pipe.decoding.configs) test_size (coco_pipe.decoding.utils.SimpleSplit attribute) threshold_lambda (coco_pipe.decoding.configs.ARDRegressionConfig attribute) tie_breakers (coco_pipe.dim_reduction.config.EvaluationConfig attribute) timestamp (coco_pipe.report.core.Report attribute) timestamp_utc (coco_pipe.report.config.ProvenanceConfig attribute) title (coco_pipe.report.config.ReportConfig attribute) (coco_pipe.report.core.InteractiveTableElement attribute) (coco_pipe.report.core.Report attribute) (coco_pipe.report.core.Section attribute) (coco_pipe.report.core.TableElement attribute) tlsq_rank (coco_pipe.dim_reduction.config.DMDConfig attribute) tmax (coco_pipe.io.dataset.BIDSDataset attribute) tmin (coco_pipe.io.dataset.BIDSDataset attribute) to_frame() (coco_pipe.dim_reduction.evaluation.core.MethodSelector method) (coco_pipe.dim_reduction.evaluation.MethodSelector method) to_reducer_kwargs() (coco_pipe.dim_reduction.config.BaseReducerConfig method) (coco_pipe.dim_reduction.config.LLEConfig method) tol (coco_pipe.decoding.configs.ARDRegressionConfig attribute) (coco_pipe.decoding.configs.BayesianRidgeConfig attribute) (coco_pipe.decoding.configs.GradientBoostingClassifierConfig attribute) (coco_pipe.decoding.configs.GradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.HistGradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.LDAConfig attribute) (coco_pipe.decoding.configs.LogisticRegressionConfig attribute) (coco_pipe.decoding.configs.MLPClassifierConfig attribute) (coco_pipe.decoding.configs.MLPRegressorConfig attribute) (coco_pipe.decoding.configs.RegularizedLinearMixin attribute) (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.decoding.configs.SupportVectorMixin attribute) TopologicalAEConfig (class in coco_pipe.dim_reduction.config) TopologicalAEReducer (class in coco_pipe.dim_reduction.reducers.topology) TopologicalSignatureDistance (class in coco_pipe.dim_reduction.reducers.topology) trajectory_acceleration() (in module coco_pipe.dim_reduction.evaluation) (in module coco_pipe.dim_reduction.evaluation.geometry) trajectory_curvature() (in module coco_pipe.dim_reduction) (in module coco_pipe.dim_reduction.evaluation) (in module coco_pipe.dim_reduction.evaluation.geometry) trajectory_dispersion() (in module coco_pipe.dim_reduction.evaluation) (in module coco_pipe.dim_reduction.evaluation.geometry) trajectory_displacement() (in module coco_pipe.dim_reduction.evaluation) (in module coco_pipe.dim_reduction.evaluation.geometry) trajectory_path_length() (in module coco_pipe.dim_reduction.evaluation) (in module coco_pipe.dim_reduction.evaluation.geometry) trajectory_separation() (in module coco_pipe.dim_reduction) (in module coco_pipe.dim_reduction.evaluation) (in module coco_pipe.dim_reduction.evaluation.geometry) trajectory_speed() (in module coco_pipe.dim_reduction) (in module coco_pipe.dim_reduction.evaluation) (in module coco_pipe.dim_reduction.evaluation.geometry) trajectory_tortuosity() (in module coco_pipe.dim_reduction.evaluation) (in module coco_pipe.dim_reduction.evaluation.geometry) trajectory_turning_angle() (in module coco_pipe.dim_reduction.evaluation) (in module coco_pipe.dim_reduction.evaluation.geometry) transform() (coco_pipe.BaseReducer method) (coco_pipe.dim_reduction.BaseReducer method) (coco_pipe.dim_reduction.core.DimReduction method) (coco_pipe.dim_reduction.DimReduction method) (coco_pipe.dim_reduction.IncrementalPCAReducer method) (coco_pipe.dim_reduction.IsomapReducer method) (coco_pipe.dim_reduction.LLEReducer method) (coco_pipe.dim_reduction.MDSReducer method) (coco_pipe.dim_reduction.PCAReducer method) (coco_pipe.dim_reduction.reducers.base.BaseReducer method) (coco_pipe.dim_reduction.reducers.BaseReducer method) (coco_pipe.dim_reduction.reducers.IncrementalPCAReducer method) (coco_pipe.dim_reduction.reducers.IsomapReducer method) (coco_pipe.dim_reduction.reducers.linear.DaskPCAReducer method) (coco_pipe.dim_reduction.reducers.linear.DaskTruncatedSVDReducer method) (coco_pipe.dim_reduction.reducers.linear.IncrementalPCAReducer method) (coco_pipe.dim_reduction.reducers.linear.PCAReducer method) (coco_pipe.dim_reduction.reducers.LLEReducer method) (coco_pipe.dim_reduction.reducers.manifold.IsomapReducer method) (coco_pipe.dim_reduction.reducers.manifold.LLEReducer method) (coco_pipe.dim_reduction.reducers.manifold.MDSReducer method) (coco_pipe.dim_reduction.reducers.manifold.SpectralEmbeddingReducer method) (coco_pipe.dim_reduction.reducers.MDSReducer method) (coco_pipe.dim_reduction.reducers.neighbor.PacmapReducer method) (coco_pipe.dim_reduction.reducers.neighbor.ParametricUMAPReducer method) (coco_pipe.dim_reduction.reducers.neighbor.PHATEReducer method) (coco_pipe.dim_reduction.reducers.neighbor.TrimapReducer method) (coco_pipe.dim_reduction.reducers.neighbor.TSNEReducer method) (coco_pipe.dim_reduction.reducers.neighbor.UMAPReducer method) (coco_pipe.dim_reduction.reducers.neural.IVISReducer method) (coco_pipe.dim_reduction.reducers.PCAReducer method) (coco_pipe.dim_reduction.reducers.spatiotemporal.DMDReducer method) (coco_pipe.dim_reduction.reducers.spatiotemporal.TRCAReducer method) (coco_pipe.dim_reduction.reducers.SpectralEmbeddingReducer method) (coco_pipe.dim_reduction.reducers.topology.TopologicalAEReducer method) (coco_pipe.dim_reduction.reducers.TSNEReducer method) (coco_pipe.dim_reduction.SpectralEmbeddingReducer method) (coco_pipe.dim_reduction.TSNEReducer method) (coco_pipe.DimReduction method) (coco_pipe.IncrementalPCAReducer method) (coco_pipe.io.SklearnWrapper method) (coco_pipe.io.SpatialWhitener method) (coco_pipe.io.transform.SklearnWrapper method) (coco_pipe.io.transform.SpatialWhitener method) (coco_pipe.IsomapReducer method) (coco_pipe.LLEReducer method) (coco_pipe.MDSReducer method) (coco_pipe.PCAReducer method) (coco_pipe.SpectralEmbeddingReducer method) (coco_pipe.TSNEReducer method) transformer (coco_pipe.io.SklearnWrapper attribute) (coco_pipe.io.transform.SklearnWrapper attribute) TRCAConfig (class in coco_pipe.dim_reduction.config) TRCAReducer (class in coco_pipe.dim_reduction.reducers.spatiotemporal) TreeMixin (class in coco_pipe.decoding.configs) TrimapConfig (class in coco_pipe.dim_reduction.config) TrimapReducer (class in coco_pipe.dim_reduction.reducers.neighbor) trustworthiness() (in module coco_pipe) (in module coco_pipe.dim_reduction) (in module coco_pipe.dim_reduction.evaluation) (in module coco_pipe.dim_reduction.evaluation.metrics) TSNEConfig (class in coco_pipe.dim_reduction.config) TSNEReducer (class in coco_pipe) (class in coco_pipe.dim_reduction) (class in coco_pipe.dim_reduction.reducers) (class in coco_pipe.dim_reduction.reducers.neighbor) tuning (coco_pipe.decoding.configs.ExperimentConfig attribute) (coco_pipe.decoding.ExperimentConfig attribute) TuningConfig (class in coco_pipe.decoding.configs) U UMAPConfig (class in coco_pipe.dim_reduction.config) UMAPReducer (class in coco_pipe.dim_reduction.reducers.neighbor) unstack() (coco_pipe.io.DataContainer method) (coco_pipe.io.structures.DataContainer method) use_scaler (coco_pipe.decoding.configs.ExperimentConfig attribute) (coco_pipe.decoding.ExperimentConfig attribute) V validate_runtime_inputs() (in module coco_pipe.descriptors.validation) validation_fraction (coco_pipe.decoding.configs.GradientBoostingClassifierConfig attribute) (coco_pipe.decoding.configs.GradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.HistGradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.MLPClassifierConfig attribute) (coco_pipe.decoding.configs.MLPRegressorConfig attribute) (coco_pipe.decoding.configs.SGDMixin attribute) var_smoothing (coco_pipe.decoding.configs.GaussianNBConfig attribute) verbose (coco_pipe.decoding.configs.ARDRegressionConfig attribute) (coco_pipe.decoding.configs.BayesianRidgeConfig attribute) (coco_pipe.decoding.configs.ExperimentConfig attribute) (coco_pipe.decoding.configs.GeneralizingEstimatorConfig attribute) (coco_pipe.decoding.configs.GradientBoostingClassifierConfig attribute) (coco_pipe.decoding.configs.GradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.HistGradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.LogisticRegressionConfig attribute) (coco_pipe.decoding.configs.MLPClassifierConfig attribute) (coco_pipe.decoding.configs.MLPRegressorConfig attribute) (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.decoding.configs.SlidingEstimatorConfig attribute) (coco_pipe.decoding.configs.SupportVectorMixin attribute) (coco_pipe.decoding.configs.TreeMixin attribute) (coco_pipe.decoding.ExperimentConfig attribute) (coco_pipe.dim_reduction.config.ParametricUMAPConfig attribute) (coco_pipe.dim_reduction.config.TopologicalAEConfig attribute) (coco_pipe.dim_reduction.reducers.neighbor.ParametricUMAPReducer attribute) (coco_pipe.dim_reduction.reducers.topology.TopologicalAEReducer attribute) (coco_pipe.fm.cbramod.CBRAModRegressionPipeline attribute) (coco_pipe.fm.cbramod.pipeline.CBRAModRegressionPipeline attribute) (coco_pipe.fm.CBRAModRegressionPipeline attribute) versions (coco_pipe.report.config.ProvenanceConfig attribute) W warm_start (coco_pipe.decoding.configs.GradientBoostingClassifierConfig attribute) (coco_pipe.decoding.configs.GradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.HistGradientBoostingRegressorConfig attribute) (coco_pipe.decoding.configs.LogisticRegressionConfig attribute) (coco_pipe.decoding.configs.MLPClassifierConfig attribute) (coco_pipe.decoding.configs.MLPRegressorConfig attribute) (coco_pipe.decoding.configs.RegularizedLinearMixin attribute) (coco_pipe.decoding.configs.SGDMixin attribute) (coco_pipe.decoding.configs.TreeMixin attribute) weights (coco_pipe.decoding.configs.KNeighborsClassifierConfig attribute) (coco_pipe.decoding.configs.KNeighborsRegressorConfig attribute) whiten (coco_pipe.dim_reduction.config.IncrementalPCAConfig attribute) (coco_pipe.dim_reduction.config.PCAConfig attribute) whitener_ (coco_pipe.io.SpatialWhitener attribute), [1] (coco_pipe.io.transform.SpatialWhitener attribute), [1] width (coco_pipe.report.core.ImageElement attribute) window_interaction (coco_pipe.decoding.configs.TemporalConfig attribute) window_length (coco_pipe.io.BIDSConfig attribute) (coco_pipe.io.config.BIDSConfig attribute) (coco_pipe.io.dataset.BIDSDataset attribute) X X (coco_pipe.io.DataContainer attribute), [1] (coco_pipe.io.structures.DataContainer attribute), [1] Y y (coco_pipe.io.DataContainer attribute), [1] (coco_pipe.io.structures.DataContainer attribute), [1] Z zscore() (coco_pipe.io.DataContainer method) (coco_pipe.io.structures.DataContainer method)